Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

28834903 .. 28843520

Gene Structure 8618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTAGAAGAGTCAAAGAACAGCAGGGGTCCACCTACCAGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGATCAGTGTGCACATGGCTTGAAGGGTGTCTTTACAATTGATTTTGATGTTGACGAGGAAGATCAAGAATTGCGAGCTCCTCGTTTAAGGAAGAAGAGGATATCATTCTATTGGTCAGAAAATGAACTAGCGCAAGGAATGAAGCAGAGCGACCATTGTTTTATCTGGCATTCACTTGGAACCATGTGCATCGAAAGGACACTGGAAAGTTTCCAAGAAACCGCTCAAGGCTACAATTACTTGTTCTACACCATATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

131

Amino Acids

14.96

Weight (kDa)

6.04

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	14 - 62	7e-15	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	128, 212
AluI	AGCT	2 cut(s)	128, 212
Alw21I	GWGCWC	2 cut(s)	148, 214
Alw44I	GTGCAC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	29, 86
AvaII	GGWCC	2 cut(s)	29, 86
BaeGI	GKGCMC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	148, 214
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	29, 86
BmgT120I	GGNCC	2 cut(s)	29, 86
BmiI	GGNNCC	3 cut(s)	30, 87, 316
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	39, 342
BseBI	CCWGG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	39, 342
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	148, 214
BsmI	GAATGC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	148, 214
Bsp143I	GATC	2 cut(s)	136, 196
BspACI	CCGC	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	30, 87, 316
BsrBI	CCGCTC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	39, 342
BssMI	GATC	2 cut(s)	136, 196
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	2 cut(s)	3, 224
BstC8I	GCNNGC	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	139, 199
BstMBI	GATC	2 cut(s)	136, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	146, 335
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	29, 86
CviAII	CATG	3 cut(s)	71, 149, 319
CviJI	RGCY	4 cut(s)	128, 153, 212, 366
CviKI_1	RGCY	4 cut(s)	128, 153, 212, 366
DpnI	GATC	2 cut(s)	138, 198
DpnII	GATC	2 cut(s)	136, 196
Eam1104I	CTCTTC	2 cut(s)	3, 224
EarI	CTCTTC	2 cut(s)	3, 224
Ecl136II	GAGCTC	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	29, 86
Eco53kI	GAGCTC	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	214
FaeI	CATG	3 cut(s)	74, 152, 322
FaiI	YATR	5 cut(s)	72, 135, 150, 320, 389
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	3 cut(s)	70, 148, 318
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	74, 152, 322
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	11
Hpy166II	GTNNAC	3 cut(s)	32, 146, 187
Hpy188I	TCNGA	2 cut(s)	90, 253
Hpy188III	TCNNGA	2 cut(s)	200, 393
Hpy8I	GTNNAC	3 cut(s)	32, 146, 187
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	74, 119, 125, 146, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	74, 152, 322
HspAI	GCGC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 196
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	10, 48, 52, 75, 286, 323
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	263
MalI	GATC	2 cut(s)	138, 198
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	136, 196
MboII	GAAGA	4 cut(s)	20, 206, 238, 241
MfeI	CAATTG	2 cut(s)	120, 171
MhlI	GDGCHC	2 cut(s)	148, 214
MluCI	AATT	5 cut(s)	75, 120, 171, 203, 370
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	4 cut(s)	69, 184, 225, 225
MseI	TTAA	2 cut(s)	50, 221
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	2 cut(s)	120, 171
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	136, 196
NlaIII	CATG	3 cut(s)	74, 152, 322
NlaIV	GGNNCC	3 cut(s)	30, 87, 316
PctI	GAATGC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	30, 87, 316
PspPI	GGNCC	2 cut(s)	29, 86
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	50, 221
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	136, 196
Sau96I	GGNCC	2 cut(s)	29, 86
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	2 cut(s)	148, 214
SetI	ASST	4 cut(s)	37, 61, 130, 214
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	2 cut(s)	29, 86
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	75, 120, 171, 203, 370
SsiI	CCGC	1 cut(s)	357
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	327
TasI	AATT	5 cut(s)	75, 120, 171, 203, 370
Tru1I	TTAA	2 cut(s)	50, 221
Tru9I	TTAA	2 cut(s)	50, 221
TscAI	CASTG	2 cut(s)	146, 342
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	273, 290
TspRI	CASTG	2 cut(s)	146, 342
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	2 cut(s)	29, 86
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.