Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

40337715 .. 40343973

Gene Structure 6259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTAGAAGAGTCAAAGAACAGCAGGGATCCAACTACCAGATTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGAAAGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAGCGTGCACATGGCTTGAAGGAATTGAAGAAAAACTGGAGCAGTTGCAGCAGCCTTGGACCCAAAAGCCGAGAGTTGGACCTGGTGCTTATCCTCGACCGTGAGTTACTCGCTGCATCTGATCGCTCTCCGTCTTCTACCTCGCAATCTCCAGTGCCCGCTCCCTCAAGGCCATCACAGACCTCAACCACAGCATCACCGTCCTCTCTGTGGGCCACGCTCCATCAACACGGACGGCTCCTCAAGTTTTTCCGCTTGGGTTCGCAGAGTGAGCCGAGGTCCACTACGCCTTCTTCCTCGGAAATCTGCTTCAGACTGCAGTGGGTGGGTATCGTTGGGGAGAAGGTGGAGTATAGCAAGAGGGAGATTTCTGTGGAGAACAATTTGGGATTTTTCGAGTCCAAGAGGATTGAGCTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

186

Amino Acids

20.61

Weight (kDa)

9.84

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	12 - 53	7.8e-12	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	2 cut(s)	297, 391
AclWI	GGATC	2 cut(s)	23, 36
AcuI	CTGAAG	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	214, 348
AgsI	TTSAA	2 cut(s)	157, 166
AjnI	CCWGG	2 cut(s)	61, 219
AluBI	AGCT	2 cut(s)	128, 553
AluI	AGCT	2 cut(s)	128, 553
Alw21I	GWGCWC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	2 cut(s)	308, 351
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	125, 186, 189, 251
AspS9I	GGNCC	5 cut(s)	86, 197, 217, 351, 417
AsuHPI	GGTGA	1 cut(s)	327
AvaII	GGWCC	4 cut(s)	86, 197, 217, 417
BaeGI	GKGCMC	2 cut(s)	148, 297
BamHI	GGATCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	137, 198, 201, 238
BccI	CCATC	2 cut(s)	319, 369
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	63, 221
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	4 cut(s)	126, 187, 190, 252
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	127, 188, 191, 253
Bme1390I	CCNGG	2 cut(s)	63, 221
Bme18I	GGWCC	4 cut(s)	86, 197, 217, 417
BmgT120I	GGNCC	5 cut(s)	86, 197, 217, 351, 417
BmiI	GGNNCC	4 cut(s)	30, 87, 199, 377
BmrFI	CCNGG	2 cut(s)	63, 221
BmsI	GCATC	2 cut(s)	263, 341
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	3 cut(s)	45, 196, 273
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	289, 365
BsaJI	CCNNGG	3 cut(s)	193, 413, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 348
Bse1I	ACTGG	2 cut(s)	179, 290
BseBI	CCWGG	2 cut(s)	63, 221
BseDI	CCNNGG	3 cut(s)	193, 413, 435
BseLI	CCNNNNNNNGG	2 cut(s)	214, 348
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	179, 290
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	2 cut(s)	148, 297
BseXI	GCAGC	4 cut(s)	137, 198, 201, 238
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	310, 353
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	214, 348
BsnI	GGCC	2 cut(s)	310, 353
Bsp1286I	GDGCHC	2 cut(s)	148, 297
Bsp143I	GATC	2 cut(s)	28, 259
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	297, 391
BspANI	GGCC	2 cut(s)	310, 353
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	4 cut(s)	30, 87, 199, 377
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	2 cut(s)	23, 36
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	179, 290
BssECI	CCNNGG	3 cut(s)	193, 413, 435
BssMI	GATC	2 cut(s)	28, 259
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	63, 221
Bst4CI	ACNGT	2 cut(s)	239, 339
Bst6I	CTCTTC	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	144, 297
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	31, 262
BstMBI	GATC	2 cut(s)	28, 259
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 134, 143, 186, 409
BstNI	CCWGG	2 cut(s)	63, 221
BstSCI	CCNGG	2 cut(s)	61, 219
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	2 cut(s)	148, 297
BstV1I	GCAGC	4 cut(s)	137, 198, 201, 238
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	310, 353
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	297, 464
Cac8I	GCNNGC	2 cut(s)	144, 297
Cfr13I	GGNCC	5 cut(s)	86, 197, 217, 351, 417
CsiI	ACCWGGT	1 cut(s)	219
CviAII	CATG	2 cut(s)	71, 149
CviJI	RGCY	9 cut(s)	128, 153, 192, 207, 310, 353, 376, 412, 553
CviKI_1	RGCY	9 cut(s)	128, 153, 192, 207, 310, 353, 376, 412, 553
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	30, 261
DpnII	GATC	2 cut(s)	28, 259
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	4 cut(s)	86, 197, 217, 417
Eco57I	CTGAAG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	61, 219
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	74, 152
FaiI	YATR	4 cut(s)	72, 135, 150, 492
FatI	CATG	2 cut(s)	70, 148
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	4 cut(s)	126, 187, 190, 252
Fsp4HI	GCNGC	4 cut(s)	126, 187, 190, 252
GluI	GCNGC	4 cut(s)	126, 187, 190, 252
GsuI	CTGGAG	3 cut(s)	45, 196, 273
HaeIII	GGCC	2 cut(s)	310, 353
Hin1II	CATG	2 cut(s)	74, 152
HinfI	GANTC	2 cut(s)	11, 536
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	146, 420
Hpy188I	TCNGA	4 cut(s)	90, 259, 439, 452
Hpy8I	GTNNAC	2 cut(s)	146, 420
HpyAV	CCTTC	3 cut(s)	151, 438, 475
HpyCH4III	ACNGT	2 cut(s)	239, 339
HpyCH4V	TGCA	7 cut(s)	74, 119, 125, 146, 186, 254, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 134, 143, 186, 409
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	74, 152
Kzo9I	GATC	2 cut(s)	28, 259
LmnI	GCTCC	4 cut(s)	177, 304, 363, 381
LpnPI	CCDG	8 cut(s)	10, 48, 52, 75, 160, 206, 233, 303
Lsp1109I	GCAGC	4 cut(s)	137, 198, 201, 238
LweI	GCATC	2 cut(s)	263, 341
MabI	ACCWGGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	30, 261
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	28, 259
MboII	GAAGA	4 cut(s)	20, 178, 264, 423
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	148, 297
MluCI	AATT	4 cut(s)	75, 120, 161, 520
MlyI	GAGTC	2 cut(s)	20, 545
MmeI	TCCRAC	2 cut(s)	56, 195
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	63, 221
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	63, 221
MwoI	GCNNNNNNNGC	5 cut(s)	125, 134, 143, 186, 409
NdeII	GATC	2 cut(s)	28, 259
NlaIII	CATG	2 cut(s)	74, 152
NlaIV	GGNNCC	4 cut(s)	30, 87, 199, 377
NmeAIII	GCCGAG	2 cut(s)	233, 438
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	127, 188, 191, 253
PleI	GAGTC	2 cut(s)	19, 544
PpsI	GAGTC	2 cut(s)	19, 544
Psp6I	CCWGG	2 cut(s)	61, 219
PspGI	CCWGG	2 cut(s)	61, 219
PspN4I	GGNNCC	4 cut(s)	30, 87, 199, 377
PspPI	GGNCC	5 cut(s)	86, 197, 217, 351, 417
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	4 cut(s)	126, 187, 190, 252
Sau3AI	GATC	2 cut(s)	28, 259
Sau96I	GGNCC	5 cut(s)	86, 197, 217, 351, 417
SchI	GAGTC	2 cut(s)	20, 545
ScrFI	CCNGG	2 cut(s)	63, 221
SduI	GDGCHC	2 cut(s)	148, 297
SetI	ASST	8 cut(s)	61, 130, 222, 281, 323, 419, 486, 555
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	263, 341
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	4 cut(s)	86, 197, 217, 417
SmlI	CTYRAG	2 cut(s)	304, 380
SmoI	CTYRAG	2 cut(s)	304, 380
Sse9I	AATT	4 cut(s)	75, 120, 161, 520
SsiI	CCGC	2 cut(s)	297, 391
SspI	AATATT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	61, 219
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	239, 339
TaqI	TCGA	2 cut(s)	234, 534
TasI	AATT	4 cut(s)	75, 120, 161, 520
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	2 cut(s)	297, 464
TseI	GCWGC	4 cut(s)	125, 186, 189, 251
TspGWI	ACGGA	2 cut(s)	258, 384
TspRI	CASTG	2 cut(s)	297, 464
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	4 cut(s)	86, 197, 217, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.