Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

4315168 .. 4318562

Gene Structure 3395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCGCTACCTTCCTCTCGAAGTAGTCATCGGGTTACCAAGGATGTCCTCACTATGCACGGGGAACGAGGAAGAGTTTCGATCTCCGGTGATCTCCTCCTCGTTGTTCCATGGAAGGTTGTCCTCCCGTTGTCTGAAGGAGGCGGAGTCTCGCTACGAGTTTCGGATATGTTGGGCCGGACTTCGAAACAGTTTTGGGTATTTTGAGCCAAGTTTCCGAAACGTGCTTGACAAAAGAACATCGGGTTCGGGCGCAAAGAAGAGCGACGGGTCGGAGTTTTTGGAAAACGGGTGGGATCCGGAGCTCGGCTTTCCCATCACATTTCAGTTAATTGGTGCTAGTTCAATAACCATGGGGAATACTTGTTATCTCAATTCGGTGTTGCAGTGGTTGACATATACTGAGCCTTTTGTTGCCTACTTGCAAAGTGTTCAACTTATGGTAGAAGAGTCAAAGAACAGCAGGGATCCACCTACCAATTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGAAGGGGTTTTGTGTGTTTGAAAATATTGCAATTGCAGCTCATTATGCTCAGCGTGCACATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

227

Amino Acids

25.52

Weight (kDa)

5.98

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	118 - 154	5e-06	Ubiquitin carboxyl-terminal hydrolase
Hist_deacetyl	PF00850	140 - 227	3.6e-29	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccIII	TCCGGA	2 cut(s)	298, 664
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	6 cut(s)	290, 303, 461, 474, 656, 669
AcuI	CTGAAG	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	345, 434, 548, 595
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	304, 566
AluI	AGCT	2 cut(s)	304, 566
Alw21I	GWGCWC	2 cut(s)	306, 586
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	6 cut(s)	290, 303, 461, 474, 656, 669
Aor13HI	TCCGGA	2 cut(s)	298, 664
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	563
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	6, 254
AspS9I	GGNCC	2 cut(s)	174, 524
AsuHPI	GGTGA	2 cut(s)	100, 617
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	586
BamHI	GGATCC	3 cut(s)	295, 466, 661
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	306, 586
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	564
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	174, 524
BmiI	GGNNCC	4 cut(s)	297, 468, 525, 663
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	38, 109, 351, 628
BsaWI	WCCGGW	3 cut(s)	85, 298, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseAI	TCCGGA	2 cut(s)	298, 664
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	38, 109, 351, 628
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	393, 590
BseRI	GAGGAG	2 cut(s)	85, 88
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	306, 586
BsiSI	CCGG	4 cut(s)	86, 177, 299, 665
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	306, 586
Bsp13I	TCCGGA	2 cut(s)	298, 664
Bsp143I	GATC	5 cut(s)	80, 90, 295, 466, 661
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	2 cut(s)	109, 351
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	394, 589
BspEI	TCCGGA	2 cut(s)	298, 664
BspLI	GGNNCC	4 cut(s)	297, 468, 525, 663
BspPI	GGATC	6 cut(s)	290, 303, 461, 474, 656, 669
BspQI	GCTCTTC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	38, 109, 351, 628
BssMI	GATC	5 cut(s)	80, 90, 295, 466, 661
BssT1I	CCWWGG	3 cut(s)	38, 109, 351
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	3 cut(s)	66, 254, 441
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	402, 576
BstDSI	CCRYGG	3 cut(s)	109, 351, 628
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	6, 254
BstKTI	GATC	5 cut(s)	83, 93, 298, 469, 664
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	5 cut(s)	80, 90, 295, 466, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	563, 572, 581
BstNI	CCWGG	1 cut(s)	501
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	3 cut(s)	295, 466, 661
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	3 cut(s)	295, 466, 661
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	3 cut(s)	109, 351, 628
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	582
CfoI	GCGC	2 cut(s)	6, 254
Cfr13I	GGNCC	2 cut(s)	174, 524
CviAII	CATG	4 cut(s)	110, 352, 509, 587
CviJI	RGCY	7 cut(s)	176, 208, 304, 309, 406, 566, 591
CviKI_1	RGCY	7 cut(s)	176, 208, 304, 309, 406, 566, 591
DdeI	CTNAG	2 cut(s)	402, 576
DpnI	GATC	5 cut(s)	82, 92, 297, 468, 663
DpnII	GATC	5 cut(s)	80, 90, 295, 466, 661
Eam1104I	CTCTTC	3 cut(s)	66, 254, 441
EarI	CTCTTC	3 cut(s)	66, 254, 441
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	38, 109, 351
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	3 cut(s)	38, 109, 351
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	3 cut(s)	38, 109, 351
FaeI	CATG	4 cut(s)	113, 355, 512, 590
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	4 cut(s)	109, 351, 508, 586
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	5, 253
GluI	GCNGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	4 cut(s)	86, 177, 299, 665
HhaI	GCGC	2 cut(s)	6, 254
Hin1II	CATG	4 cut(s)	113, 355, 512, 590
Hin6I	GCGC	2 cut(s)	4, 252
HinP1I	GCGC	2 cut(s)	4, 252
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	2 cut(s)	146, 449
HpaII	CCGG	4 cut(s)	86, 177, 299, 665
HphI	GGTGA	2 cut(s)	100, 617
Hpy166II	GTNNAC	3 cut(s)	393, 584, 625
Hpy188I	TCNGA	5 cut(s)	135, 165, 218, 274, 528
Hpy188III	TCNNGA	3 cut(s)	17, 299, 665
Hpy8I	GTNNAC	3 cut(s)	393, 584, 625
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	20, 108, 130, 523, 589
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	7 cut(s)	57, 385, 424, 512, 557, 563, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	563, 572, 581
HpyF3I	CTNAG	2 cut(s)	402, 576
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	113, 355, 512, 590
HspAI	GCGC	2 cut(s)	4, 252
Kpn2I	TCCGGA	2 cut(s)	298, 664
Kzo9I	GATC	5 cut(s)	80, 90, 295, 466, 661
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	99, 190, 312, 448, 486, 513, 678
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	5 cut(s)	82, 92, 297, 468, 663
MboI	GATC	5 cut(s)	80, 90, 295, 466, 661
MboII	GAAGA	4 cut(s)	83, 271, 458, 667
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	3 cut(s)	295, 466, 661
MhlI	GDGCHC	2 cut(s)	306, 586
MluCI	AATT	6 cut(s)	330, 373, 478, 513, 558, 609
MlyI	GAGTC	2 cut(s)	155, 458
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	24, 58, 61, 106, 109, 133, 133, 507, 652
MroI	TCCGGA	2 cut(s)	298, 664
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	329, 488
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	4 cut(s)	86, 177, 299, 665
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	3 cut(s)	563, 572, 581
NcoI	CCATGG	2 cut(s)	109, 351
NdeII	GATC	5 cut(s)	80, 90, 295, 466, 661
NlaIII	CATG	4 cut(s)	113, 355, 512, 590
NlaIV	GGNNCC	4 cut(s)	297, 468, 525, 663
NmeAIII	GCCGAG	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	154, 457
PpsI	GAGTC	2 cut(s)	154, 457
PsiI	TTATAA	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	499
PspEI	GGTNACC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	4 cut(s)	297, 468, 525, 663
PspPI	GGNCC	2 cut(s)	174, 524
PsuI	RGATCY	3 cut(s)	295, 466, 661
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	329, 488
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	5 cut(s)	80, 90, 295, 466, 661
Sau96I	GGNCC	2 cut(s)	174, 524
SchI	GAGTC	2 cut(s)	155, 458
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	306, 586
SetI	ASST	7 cut(s)	12, 119, 225, 306, 475, 499, 568
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	633
Sse9I	AATT	6 cut(s)	330, 373, 478, 513, 558, 609
SsiI	CCGC	1 cut(s)	143
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	3 cut(s)	38, 109, 351
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	18, 79, 184
TasI	AATT	6 cut(s)	330, 373, 478, 513, 558, 609
Tru1I	TTAA	2 cut(s)	329, 488
Tru9I	TTAA	2 cut(s)	329, 488
TscAI	CASTG	1 cut(s)	392
TseI	GCWGC	1 cut(s)	563
TspRI	CASTG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.