Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

63816102 .. 63818504

Gene Structure 2403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGGAATACTTGTTATCTCAATTCGGTGTTGCAGTGCTTGACATATACTGGGCCTTTAGCTGCCTACTTGCAAAGTGGCAGGCATCGAAATTATGTATACAAGTGCTCCAAGGACAAACATATGCAATTGTTGAGACATTCAAGGAGACTGATTGCAGCTAGAGCGGGAATTGCCTTAATTGATTCAGTGGTAGAAGAGTCAAAGAATAGCAGGGATCCACCTACTGGTTTTGCTTTAATAAGACCTCCAAGACACCATGCAATTTCAAAGGGTCTGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAATGTGCACATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCTGGATATATTCTTCCTTTCAACTCACCAAAAAGTAGTGCAAAGATGGCCTTGCTTATGGAATGGTACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

162

Amino Acids

18.2

Weight (kDa)

9.11

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	1 - 54	7.2e-08	Ubiquitin carboxyl-terminal hydrolase
Hist_deacetyl	PF00850	46 - 156	2.7e-33	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	3 cut(s)	212, 225, 420
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	144, 270, 346, 435
AluBI	AGCT	3 cut(s)	62, 161, 317
AluI	AGCT	3 cut(s)	62, 161, 317
Alw21I	GWGCWC	2 cut(s)	110, 337
Alw26I	GTCTC	2 cut(s)	130, 142
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	212, 225, 420
AoxI	GGCC	2 cut(s)	53, 461
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	62, 158, 314
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	368, 431
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	110, 337
BbvI	GCAGC	3 cut(s)	49, 170, 326
BccI	CCATC	2 cut(s)	274, 453
BcoDI	GTCTC	2 cut(s)	130, 142
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	63, 159, 315
BlsI	GCNGC	3 cut(s)	64, 160, 316
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	94, 388
BmuI	ACTGGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	111, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	55, 232
BseDI	CCNNGG	2 cut(s)	111, 379
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	55, 232
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	49, 170, 326
BshFI	GGCC	2 cut(s)	55, 463
BsiHKAI	GWGCWC	2 cut(s)	110, 337
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	130, 142
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	55, 463
Bsp1286I	GDGCHC	2 cut(s)	110, 337
Bsp143I	GATC	2 cut(s)	217, 412
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	55, 463
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	212, 225, 420
BsrBI	CCGCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	55, 232
BssECI	CCNNGG	2 cut(s)	111, 379
BssMI	GATC	2 cut(s)	217, 412
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	220, 415
BstMAI	GTCTC	2 cut(s)	130, 142
BstMBI	GATC	2 cut(s)	217, 412
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 173, 314, 323, 332, 460
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	49, 170, 326
BstX2I	RGATCY	2 cut(s)	217, 412
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	2 cut(s)	217, 412
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	55, 463
BtgI	CCRYGG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 195
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	260, 338
CviJI	RGCY	6 cut(s)	55, 62, 161, 317, 342, 463
CviKI_1	RGCY	6 cut(s)	55, 62, 161, 317, 342, 463
CviQI	GTAC	1 cut(s)	480
DpnI	GATC	2 cut(s)	219, 414
DpnII	GATC	2 cut(s)	217, 412
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	263, 341
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 448, 480
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	259, 337
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	63, 159, 315
Fsp4HI	GCNGC	3 cut(s)	63, 159, 315
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	63, 159, 315
HaeIII	GGCC	2 cut(s)	55, 463
Hin1II	CATG	2 cut(s)	263, 341
HinfI	GANTC	2 cut(s)	185, 200
HphI	GGTGA	2 cut(s)	368, 431
Hpy166II	GTNNAC	4 cut(s)	100, 335, 376, 482
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	4 cut(s)	100, 335, 376, 482
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	9 cut(s)	34, 73, 127, 158, 263, 308, 314, 335, 454
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 173, 314, 323, 332, 460
Hsp92II	CATG	2 cut(s)	263, 341
Kzo9I	GATC	2 cut(s)	217, 412
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	5 cut(s)	36, 67, 199, 213, 401
Lsp1109I	GCAGC	3 cut(s)	49, 170, 326
LweI	GCATC	2 cut(s)	94, 388
MaeI	CTAG	1 cut(s)	162
MalI	GATC	2 cut(s)	219, 414
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	217, 412
MboII	GAAGA	2 cut(s)	209, 418
MfeI	CAATTG	2 cut(s)	128, 309
MflI	RGATCY	2 cut(s)	217, 412
MhlI	GDGCHC	2 cut(s)	110, 337
MluCI	AATT	8 cut(s)	22, 91, 128, 171, 180, 264, 309, 360
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	258, 403
MseI	TTAA	2 cut(s)	179, 239
MslI	CAYNNNNRTG	1 cut(s)	384
MunI	CAATTG	2 cut(s)	128, 309
MwoI	GCNNNNNNNGC	6 cut(s)	164, 173, 314, 323, 332, 460
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	2 cut(s)	217, 412
NlaIII	CATG	2 cut(s)	263, 341
NlaIV	GGNNCC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	64, 160, 316
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	217, 412
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	179, 239
SatI	GCNGC	3 cut(s)	63, 159, 315
Sau3AI	GATC	2 cut(s)	217, 412
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	110, 337
SetI	ASST	5 cut(s)	64, 163, 226, 250, 319
SfaNI	GCATC	2 cut(s)	94, 388
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	22, 91, 128, 171, 180, 264, 309, 360
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	88
TasI	AATT	8 cut(s)	22, 91, 128, 171, 180, 264, 309, 360
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	179, 239
Tru9I	TTAA	2 cut(s)	179, 239
TscAI	CASTG	2 cut(s)	41, 195
TseI	GCWGC	3 cut(s)	62, 158, 314
TspRI	CASTG	2 cut(s)	41, 195
Van91I	CCANNNNNTGG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.