Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010612.1

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

2091 .. 3921

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010612.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggtggccgactcatctcggaggtgtagcctggcattgactcgtcggaggaaggcgaagaagatgttggttacggcaaaaaaatccaaggaggatctgaaggaagcctgcagatcatgctcagatgctcttgaacatcctatgaatttggggtcatctccttttgcaggtctcttgtttcatgattttgtggcaaactgcttgacaaaagaacatcggggcgctggttcgataaccatggggaatacttgttatctcaattcggtgttgcagtgcttgacatatactgagcctttagctgcctacttgcaaagtggtaggcatcgaaattatgtagaagagtcaaagaacagcagggatccacctactggttttgctttaataagacctccaggacaccatgtaatttcaaagggactgatagggttttgtgtgtttggaaatattgcaattgcagctcattatgctcaacgtgcacatggcttgaagggtgtctttataattgattttgatgttcaccacgggaatgggacaaatgattctttctatgaggatccagatatattcttcctttcaactcaccaagtaagtaacaatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

200

Amino Acids

22.13

Weight (kDa)

8.85

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	368
AclWI	GGATC	5 cut(s)	102, 353, 366, 548, 561
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	167, 368
AgsI	TTSAA	4 cut(s)	134, 411, 487, 576
AjnI	CCWGG	2 cut(s)	30, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	299, 458
AluI	AGCT	2 cut(s)	299, 458
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	176
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	5 cut(s)	102, 353, 366, 548, 561
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	299, 455
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	509, 572
BaeGI	GKGCMC	1 cut(s)	478
BamHI	GGATCC	2 cut(s)	358, 553
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	286, 467
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	32, 393
BcoDI	GTCTC	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	2 cut(s)	300, 456
BlsI	GCNGC	2 cut(s)	301, 457
Bme1390I	CCNGG	2 cut(s)	32, 393
BmiI	GGNNCC	2 cut(s)	360, 555
BmrFI	CCNGG	2 cut(s)	32, 393
BmsI	GCATC	2 cut(s)	115, 331
BpmI	CTGGAG	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	87, 237, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 368
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	32, 393
BseDI	CCNNGG	3 cut(s)	87, 237, 520
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	167, 368
BseMII	CTCAG	2 cut(s)	135, 279
BseNI	ACTGG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	286, 467
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	429, 544
BslI	CCNNNNNNNGG	2 cut(s)	167, 368
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	429, 544
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	94, 113, 358, 553
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	134, 280
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	360, 555
BspMAI	CTGCAG	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	5 cut(s)	102, 353, 366, 548, 561
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	87, 237, 520
BssMI	GATC	4 cut(s)	94, 113, 358, 553
BssT1I	CCWWGG	2 cut(s)	87, 237
Bst2UI	CCWGG	2 cut(s)	32, 393
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	121, 288
BstDSI	CCRYGG	2 cut(s)	237, 520
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	4 cut(s)	97, 116, 361, 556
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	94, 113, 358, 553
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 455, 464, 473
BstNI	CCWGG	2 cut(s)	32, 393
BstSCI	CCNGG	2 cut(s)	30, 391
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	286, 467
BstX2I	RGATCY	3 cut(s)	94, 358, 553
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	3 cut(s)	94, 358, 553
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	2 cut(s)	237, 520
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	224
CviAII	CATG	5 cut(s)	117, 182, 238, 401, 479
CviJI	RGCY	7 cut(s)	8, 30, 107, 292, 299, 458, 483
CviKI_1	RGCY	7 cut(s)	8, 30, 107, 292, 299, 458, 483
DdeI	CTNAG	2 cut(s)	121, 288
DpnI	GATC	4 cut(s)	96, 115, 360, 555
DpnII	GATC	4 cut(s)	94, 113, 358, 553
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	87, 237
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	30, 391
EcoT14I	CCWWGG	2 cut(s)	87, 237
ErhI	CCWWGG	2 cut(s)	87, 237
FaeI	CATG	5 cut(s)	120, 185, 241, 404, 482
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	429, 544
FatI	CATG	5 cut(s)	116, 181, 237, 400, 478
Fnu4HI	GCNGC	2 cut(s)	300, 456
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	300, 456
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	300, 456
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	5 cut(s)	120, 185, 241, 404, 482
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	11, 40, 341, 539
HphI	GGTGA	2 cut(s)	509, 572
Hpy166II	GTNNAC	2 cut(s)	476, 517
Hpy188I	TCNGA	4 cut(s)	21, 48, 99, 124
Hpy188III	TCNNGA	3 cut(s)	131, 182, 557
Hpy8I	GTNNAC	2 cut(s)	476, 517
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	46, 94, 481
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	7 cut(s)	111, 167, 271, 310, 449, 455, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 455, 464, 473
HpyF3I	CTNAG	2 cut(s)	121, 288
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	5 cut(s)	120, 185, 241, 404, 482
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	94, 113, 358, 553
Lsp1109I	GCAGC	2 cut(s)	286, 467
LweI	GCATC	2 cut(s)	115, 331
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	70, 590
MalI	GATC	4 cut(s)	96, 115, 360, 555
MboI	GATC	4 cut(s)	94, 113, 358, 553
MboII	GAAGA	4 cut(s)	70, 73, 350, 559
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	3 cut(s)	94, 358, 553
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	7 cut(s)	145, 259, 328, 405, 450, 501, 595
MlyI	GAGTC	3 cut(s)	5, 34, 350
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	5 cut(s)	15, 42, 85, 399, 544
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	32, 393
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	32, 393
MwoI	GCNNNNNNNGC	4 cut(s)	117, 455, 464, 473
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	94, 113, 358, 553
NlaIII	CATG	5 cut(s)	120, 185, 241, 404, 482
NlaIV	GGNNCC	2 cut(s)	360, 555
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	301, 457
PleI	GAGTC	3 cut(s)	5, 34, 349
PpsI	GAGTC	3 cut(s)	5, 34, 349
PsiI	TTATAA	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	30, 391
PspGI	CCWGG	2 cut(s)	30, 391
PspN4I	GGNNCC	2 cut(s)	360, 555
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	94, 358, 553
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	2 cut(s)	300, 456
Sau3AI	GATC	4 cut(s)	94, 113, 358, 553
SchI	GAGTC	3 cut(s)	5, 34, 350
ScrFI	CCNGG	2 cut(s)	32, 393
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	7 cut(s)	26, 172, 301, 367, 391, 460, 475
SfaNI	GCATC	2 cut(s)	115, 331
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	7 cut(s)	145, 259, 328, 405, 450, 501, 595
SspI	AATATT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	30, 391
StyI	CCWWGG	2 cut(s)	87, 237
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	230, 325
TasI	AATT	7 cut(s)	145, 259, 328, 405, 450, 501, 595
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	2 cut(s)	299, 455
TspDTI	ATGAA	2 cut(s)	158, 170
TspRI	CASTG	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.