Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

53405097 .. 53406120

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG277400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGAATACTTGTTATCTCAATTCAGTGTTGCAGTGCTTGACATATACTGAGCCTTTAGCTGCCTACTTGCAAAGTGGCAGGCATCGAAATTATTTTAAGGTAGAAGAGTCAAAGAACAGCAGGGATCCACCTACTGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTTCAAAGGGTCTGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAACGTGCACATGGCTTAAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTCAACTCACCATGTAAGTAACAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

6.74

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	1 - 36	1.7e-07	Ubiquitin carboxyl-terminal hydrolase
Hist_deacetyl	PF00850	46 - 122	6.6e-32	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	325
AclWI	GGATC	4 cut(s)	122, 135, 317, 330
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	180, 345
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	62, 227
AluI	AGCT	2 cut(s)	62, 227
Alw21I	GWGCWC	1 cut(s)	247
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	4 cut(s)	122, 135, 317, 330
Aor13HI	TCCGGA	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	62, 224
AsuHPI	GGTGA	2 cut(s)	278, 341
BaeGI	GKGCMC	1 cut(s)	247
BamHI	GGATCC	2 cut(s)	127, 322
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	49, 236
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	63, 225
BlsI	GCNGC	2 cut(s)	64, 226
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	129, 324
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	94, 298
BpmI	CTGGAG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	49, 236
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	127, 322
BspCNI	CTCAG	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	129, 324
BspPI	GGATC	4 cut(s)	122, 135, 317, 330
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	127, 322
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	130, 325
BstMBI	GATC	2 cut(s)	127, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	49, 236
BstX2I	RGATCY	2 cut(s)	127, 322
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	2 cut(s)	127, 322
BtgI	CCRYGG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	33, 41
Cac8I	GCNNGC	1 cut(s)	83
CviAII	CATG	3 cut(s)	170, 248, 353
CviJI	RGCY	4 cut(s)	55, 62, 227, 252
CviKI_1	RGCY	4 cut(s)	55, 62, 227, 252
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	129, 324
DpnII	GATC	2 cut(s)	127, 322
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	173, 251, 356
FaiI	YATR	9 cut(s)	46, 48, 171, 234, 249, 269, 318, 332, 354
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	169, 247, 352
Fnu4HI	GCNGC	2 cut(s)	63, 225
Fsp4HI	GCNGC	2 cut(s)	63, 225
GluI	GCNGC	2 cut(s)	63, 225
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	3 cut(s)	173, 251, 356
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	278, 341
Hpy166II	GTNNAC	2 cut(s)	245, 286
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	245, 286
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	6 cut(s)	34, 73, 173, 218, 224, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	173, 251, 356
Kpn2I	TCCGGA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	127, 322
LpnPI	CCDG	6 cut(s)	67, 109, 123, 147, 174, 339
Lsp1109I	GCAGC	2 cut(s)	49, 236
LweI	GCATC	2 cut(s)	94, 298
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	129, 324
MboI	GATC	2 cut(s)	127, 322
MboII	GAAGA	2 cut(s)	119, 328
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	127, 322
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	6 cut(s)	22, 91, 174, 219, 270, 364
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	168, 313
MroI	TCCGGA	1 cut(s)	325
MseI	TTAA	3 cut(s)	99, 149, 254
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
NdeII	GATC	2 cut(s)	127, 322
NlaIII	CATG	3 cut(s)	173, 251, 356
NlaIV	GGNNCC	2 cut(s)	129, 324
PflMI	CCANNNNNTGG	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	64, 226
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	129, 324
PsuI	RGATCY	2 cut(s)	127, 322
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	99, 149, 254
SatI	GCNGC	2 cut(s)	63, 225
Sau3AI	GATC	2 cut(s)	127, 322
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	64, 105, 136, 160, 229, 244
SfaNI	GCATC	2 cut(s)	94, 298
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	6 cut(s)	22, 91, 174, 219, 270, 364
SspI	AATATT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	160
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	88
TasI	AATT	6 cut(s)	22, 91, 174, 219, 270, 364
Tru1I	TTAA	3 cut(s)	99, 149, 254
Tru9I	TTAA	3 cut(s)	99, 149, 254
TscAI	CASTG	2 cut(s)	33, 41
TseI	GCWGC	2 cut(s)	62, 224
TspRI	CASTG	2 cut(s)	33, 41
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.