Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

33622930 .. 33626501

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCGCTACCTTCCTCTCGAAGTAGTCATCGGGTTACCAAAGATGTCCTCCCTATGCACGGGGAACAGAGGAAGAGTTTCGATCTCCGCCGATCTCCTCCTCGTTGTTCCATGGAAGCTTCTTTTCCTTCCCCGCAACTCAACCCTTCGATGGTCGGCCCATGATGTTGCGAACCCGCCGAGTTCGAAGAATAGCTTGGTGCTACTCGTCCGTTTGGTCTTCATCGATGGTCGTATTCGATCATCAAGTCCGCCATCAACGAAGCTCGTGGAAGCTGGTCCGCCGGCGATCGTGGCTTCTCGCAAGTCCGCTCCTGGCCTCCGGCTGTGCAGGGCCGGTTCCGGCCTCGGTTCGGTGCGGTCCTGGGCCTCAGTTCCGGTTCGGTGCAGTCCAGTTCCTGGGGCCTGGGCTCGGTGGGTCCTGGGTTCCAGCTCCGGTCCCGGCTACTCCTCACCAAGCGCCTTCAACAGAGAACTCGCAGGAAGTCGCATCGTTCAAATTCCGGCTCTAAGCTCCGAGAGCAATTCGTGGACCACCGCCGCAGCTCCGCCCGGATTTGCAGTGCCACTCGATTTGCTTGATTTCTCGAAGGAAAATGGGGATGATGTTTATGTTACTAGCTCAGTTATTAGTGTGTGCTGCAAATTGAGAGTTATGGGAATTGCTCGGAGAGGGTTTGATGAATGTTGGATTGGATTTTGTGGCACCAATATCCAAGGCATCTCGCTAAGCAAAGGACCCAGAGAGTCGGAAGAGTTCGGCCCGGGAAATGTTACAAAGTCGTTTACAGAGGAGTATTTTGTAAAGGAATCAGGGGTTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

29.26

Weight (kDa)

9.53

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	498
AfiI	CCNNNNNNNGG	5 cut(s)	58, 150, 352, 398, 411
AgsI	TTSAA	2 cut(s)	466, 497
AjnI	CCWGG	5 cut(s)	313, 362, 397, 404, 420
AjuI	GAANNNNNNNTTGG	4 cut(s)	179, 211, 675, 707
AluBI	AGCT	8 cut(s)	118, 195, 265, 275, 432, 513, 545, 621
AluI	AGCT	8 cut(s)	118, 195, 265, 275, 432, 513, 545, 621
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	763
AoxI	GGCC	7 cut(s)	156, 316, 333, 343, 366, 402, 760
ApeKI	GCWGC	2 cut(s)	542, 639
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	6, 461
AsuC2I	CCSGG	4 cut(s)	441, 552, 764, 765
AsuHPI	GGTGA	1 cut(s)	444
AsuII	TTCGAA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	763
AvaII	GGWCC	6 cut(s)	278, 360, 418, 437, 531, 737
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	554, 626
BccI	CCATC	3 cut(s)	144, 221, 262
BciT130I	CCWGG	5 cut(s)	315, 364, 399, 406, 422
BcnI	CCSGG	4 cut(s)	441, 552, 764, 765
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	3 cut(s)	540, 543, 640
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	3 cut(s)	541, 544, 641
Bme1390I	CCNGG	9 cut(s)	315, 364, 399, 406, 422, 441, 552, 764, 765
Bme18I	GGWCC	6 cut(s)	278, 360, 418, 437, 531, 737
BmeT110I	CYCGRG	1 cut(s)	763
BmiI	GGNNCC	7 cut(s)	340, 403, 419, 427, 439, 706, 739
BmrFI	CCNGG	9 cut(s)	315, 364, 399, 406, 422, 441, 552, 764, 765
BmsI	GCATC	2 cut(s)	498, 729
BpiI	GAAGAC	1 cut(s)	211
Bpu1102I	GCTNAGC	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	185
BpuMI	CCSGG	4 cut(s)	441, 552, 764, 765
Bsa29I	ATCGAT	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	822
BsaJI	CCNNGG	8 cut(s)	110, 346, 363, 398, 405, 421, 715, 763
BsaWI	WCCGGW	2 cut(s)	376, 434
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 150, 352, 398, 411
Bse118I	RCCGGY	2 cut(s)	283, 335
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	5 cut(s)	315, 364, 399, 406, 422
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	8 cut(s)	110, 346, 363, 398, 405, 421, 715, 763
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	5 cut(s)	58, 150, 352, 398, 411
BseMII	CTCAG	2 cut(s)	384, 636
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	4 cut(s)	86, 89, 439, 806
BseXI	GCAGC	2 cut(s)	554, 626
BsgI	GTGCAG	2 cut(s)	349, 406
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	7 cut(s)	158, 318, 335, 345, 368, 404, 762
BshNI	GGYRCC	1 cut(s)	704
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	763
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	5 cut(s)	58, 150, 352, 398, 411
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	7 cut(s)	158, 318, 335, 345, 368, 404, 762
BsoBI	CYCGRG	1 cut(s)	763
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	81, 91, 239, 288
Bsp1720I	GCTNAGC	1 cut(s)	728
Bsp19I	CCATGG	1 cut(s)	110
BspANI	GGCC	7 cut(s)	158, 318, 335, 345, 368, 404, 762
BspCNI	CTCAG	2 cut(s)	383, 635
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	7 cut(s)	340, 403, 419, 427, 439, 706, 739
BspT104I	TTCGAA	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	283, 335
BsrI	ACTGG	1 cut(s)	392
BssAI	RCCGGY	2 cut(s)	283, 335
BssECI	CCNNGG	8 cut(s)	110, 346, 363, 398, 405, 421, 715, 763
BssMI	GATC	4 cut(s)	81, 91, 239, 288
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	110, 715
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	5 cut(s)	315, 364, 399, 406, 422
Bst6I	CTCTTC	2 cut(s)	67, 747
BstBAI	YACGTR	1 cut(s)	822
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	370, 509, 622, 728
BstDSI	CCRYGG	1 cut(s)	110
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	6, 461
BstKTI	GATC	4 cut(s)	84, 94, 242, 291
BstMBI	GATC	4 cut(s)	81, 91, 239, 288
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 519
BstNI	CCWGG	5 cut(s)	315, 364, 399, 406, 422
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	9 cut(s)	313, 362, 397, 404, 420, 439, 550, 762, 763
BstV1I	GCAGC	2 cut(s)	554, 626
BstV2I	GAAGAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	7 cut(s)	158, 318, 335, 345, 368, 404, 762
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	2 cut(s)	6, 461
Cfr10I	RCCGGY	2 cut(s)	283, 335
Cfr9I	CCCGGG	1 cut(s)	763
ClaI	ATCGAT	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	2 cut(s)	111, 161
DdeI	CTNAG	4 cut(s)	370, 509, 622, 728
DpnI	GATC	4 cut(s)	83, 93, 241, 290
DpnII	GATC	4 cut(s)	81, 91, 239, 288
Eam1104I	CTCTTC	2 cut(s)	67, 747
EarI	CTCTTC	2 cut(s)	67, 747
EciI	GGCGGA	4 cut(s)	76, 240, 270, 537
Eco130I	CCWWGG	2 cut(s)	110, 715
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	6 cut(s)	278, 360, 418, 437, 531, 737
Eco88I	CYCGRG	1 cut(s)	763
Eco91I	GGTNACC	1 cut(s)	33
EcoO109I	RGGNCCY	3 cut(s)	402, 418, 737
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	5 cut(s)	313, 362, 397, 404, 420
EcoT14I	CCWWGG	2 cut(s)	110, 715
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	110, 715
FaeI	CATG	2 cut(s)	114, 164
FaiI	YATR	5 cut(s)	55, 112, 162, 612, 656
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	110, 160
FauI	CCCGC	2 cut(s)	140, 183
Fnu4HI	GCNGC	3 cut(s)	540, 543, 640
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	540, 543, 640
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	5, 460
GluI	GCNGC	3 cut(s)	540, 543, 640
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	7 cut(s)	158, 318, 335, 345, 368, 404, 762
HhaI	GCGC	2 cut(s)	6, 461
Hin1II	CATG	2 cut(s)	114, 164
Hin6I	GCGC	2 cut(s)	4, 459
HinP1I	GCGC	2 cut(s)	4, 459
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	746, 809
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	2 cut(s)	531, 786
Hpy188I	TCNGA	3 cut(s)	517, 669, 751
Hpy188III	TCNNGA	2 cut(s)	17, 586
Hpy8I	GTNNAC	2 cut(s)	531, 786
HpyAV	CCTTC	5 cut(s)	20, 137, 155, 472, 583
HpyCH4IV	ACGT	1 cut(s)	821
HpyCH4V	TGCA	5 cut(s)	57, 330, 387, 560, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 519
HpyF3I	CTNAG	4 cut(s)	370, 509, 622, 728
HpySE526I	ACGT	1 cut(s)	821
Hsp92II	CATG	2 cut(s)	114, 164
HspAI	GCGC	2 cut(s)	4, 459
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	81, 91, 239, 288
LmnI	GCTCC	4 cut(s)	316, 437, 518, 550
Lsp1109I	GCAGC	2 cut(s)	554, 626
LweI	GCATC	2 cut(s)	498, 729
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	4 cut(s)	33, 613, 772, 817
MalI	GATC	4 cut(s)	83, 93, 241, 290
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	4 cut(s)	81, 91, 239, 288
MboII	GAAGA	4 cut(s)	84, 199, 211, 764
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	4 cut(s)	498, 523, 644, 660
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	2 cut(s)	668, 729
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	76
MspR9I	CCNGG	9 cut(s)	315, 364, 399, 406, 422, 441, 552, 764, 765
MvaI	CCWGG	5 cut(s)	315, 364, 399, 406, 422
MwoI	GCNNNNNNNGC	2 cut(s)	293, 519
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	4 cut(s)	441, 552, 764, 765
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	4 cut(s)	81, 91, 239, 288
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	114, 164
NlaIV	GGNNCC	7 cut(s)	340, 403, 419, 427, 439, 706, 739
NmeAIII	GCCGAG	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	809
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	541, 544, 641
Ple19I	CGATCG	1 cut(s)	291
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
Ppu21I	YACGTR	1 cut(s)	822
PpuMI	RGGWCCY	2 cut(s)	418, 737
Psp5II	RGGWCCY	2 cut(s)	418, 737
Psp6I	CCWGG	5 cut(s)	313, 362, 397, 404, 420
PspEI	GGTNACC	1 cut(s)	33
PspGI	CCWGG	5 cut(s)	313, 362, 397, 404, 420
PspN4I	GGNNCC	7 cut(s)	340, 403, 419, 427, 439, 706, 739
PspPPI	RGGWCCY	2 cut(s)	418, 737
PstNI	CAGNNNCTG	1 cut(s)	398
PvuI	CGATCG	1 cut(s)	291
SatI	GCNGC	3 cut(s)	540, 543, 640
Sau3AI	GATC	4 cut(s)	81, 91, 239, 288
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	9 cut(s)	315, 364, 399, 406, 422, 441, 552, 764, 765
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	498, 729
SfuI	TTCGAA	1 cut(s)	185
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	6 cut(s)	278, 360, 418, 437, 531, 737
SmaI	CCCGGG	1 cut(s)	765
Sse9I	AATT	4 cut(s)	498, 523, 644, 660
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	9 cut(s)	313, 362, 397, 404, 420, 439, 550, 762, 763
StyI	CCWWGG	2 cut(s)	110, 715
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	8 cut(s)	18, 80, 148, 185, 225, 238, 570, 587
TasI	AATT	4 cut(s)	498, 523, 644, 660
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	809
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	2 cut(s)	542, 639
TspDTI	ATGAA	2 cut(s)	211, 696
TspGWI	ACGGA	1 cut(s)	200
TspMI	CCCGGG	1 cut(s)	763
TspRI	CASTG	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	6 cut(s)	278, 360, 418, 437, 531, 737
XapI	RAATTY	1 cut(s)	498
XmaI	CCCGGG	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.