Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

36605532 .. 36607293

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTAATGCGAAAACTATTGGGTTGTGTTTTTTGGAACATAGGGAACTTGGAATCGGGATAGTGCCATACAGCCCTCTTGGTCAAGGATCTTTTGGTGGCAGGGCAGTTGTGGAAGCTATATCATCAAGTAGTGTTGTGGTAGAAGAGTCAAAGAACAGCAAGGATCCACCTACTGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTTCAAAGGGTCTGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAACGTGCACATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCATGAGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTCAACTCACCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

132

Amino Acids

14.18

Weight (kDa)

6.01

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	57 - 131	2.7e-30	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	5 cut(s)	97, 161, 174, 356, 369
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	219, 295, 384
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	119, 266
AluI	AGCT	2 cut(s)	119, 266
Alw21I	GWGCWC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	5 cut(s)	97, 161, 174, 356, 369
Aor13HI	TCCGGA	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	317, 380
BaeGI	GKGCMC	1 cut(s)	286
BamHI	GGATCC	2 cut(s)	166, 361
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	168, 363
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	89, 166, 361
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	168, 363
BspPI	GGATC	5 cut(s)	97, 161, 174, 356, 369
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	89, 166, 361
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	141
BstKTI	GATC	3 cut(s)	92, 169, 364
BstMBI	GATC	3 cut(s)	89, 166, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 272, 281
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	3 cut(s)	89, 166, 361
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	3 cut(s)	89, 166, 361
CviAII	CATG	3 cut(s)	209, 287, 329
CviJI	RGCY	4 cut(s)	75, 119, 266, 291
CviKI_1	RGCY	4 cut(s)	75, 119, 266, 291
DpnI	GATC	3 cut(s)	91, 168, 363
DpnII	GATC	3 cut(s)	89, 166, 361
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	3 cut(s)	212, 290, 332
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	208, 286, 328
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	183
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	3 cut(s)	212, 290, 332
HinfI	GANTC	2 cut(s)	54, 149
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	2 cut(s)	317, 380
Hpy166II	GTNNAC	2 cut(s)	284, 325
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	2 cut(s)	58, 365
Hpy8I	GTNNAC	2 cut(s)	284, 325
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	212, 257, 263, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 272, 281
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	212, 290, 332
Kpn2I	TCCGGA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	89, 166, 361
LpnPI	CCDG	5 cut(s)	88, 162, 186, 213, 378
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	280
MalI	GATC	3 cut(s)	91, 168, 363
MboI	GATC	3 cut(s)	89, 166, 361
MboII	GAAGA	2 cut(s)	158, 367
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	3 cut(s)	89, 166, 361
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	213, 258, 309
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	87, 207, 352
MroI	TCCGGA	1 cut(s)	364
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	263, 272, 281
NdeII	GATC	3 cut(s)	89, 166, 361
NlaIII	CATG	3 cut(s)	212, 290, 332
NlaIV	GGNNCC	2 cut(s)	168, 363
PfeI	GAWTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	168, 363
PsuI	RGATCY	3 cut(s)	89, 166, 361
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	89, 166, 361
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	5 cut(s)	121, 175, 199, 268, 283
SfaNI	GCATC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	3 cut(s)	213, 258, 309
SspI	AATATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	283
TasI	AATT	3 cut(s)	213, 258, 309
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseI	GCWGC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.