Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002351.1

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

14819 .. 17976

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002351.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgattgagaggaagaatggtttgaaaaattttgagggcgctagttcgataaccatggggaatacttgttatctcaattcggtgttgcagtgcttgacatatactgagcctttagccgcctacttgcaaagtggcaggcatcgaaatcatgtagaagagtcaaagaacagtagggatccacctattggttttgctttaataagacctccaggacaccatgcaatttcaaagggtctgatggggttttgtgtgtttggaaatattgcaattgcagctcattatgttcaacgtgcacatggcttgaagggtgtctttataattgattttgatgttcaccacaggaatgggacaaatgatgctttctatgaggatccggatatagtcttcctttcaactcaccaaattgtaactgccaccaccacacccccaatctcgagagcacaatcacgcctccttctgctgtgtgattcgaaacccagccacaacccatcttcactccatctgggacaagatcctggtggatcgagacccagactcagagatcaggtcgattgtgcccagccacacgaccaactatcaccttatgctcttcacacgactcctgtattgaaaccaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

206

Amino Acids

22.73

Weight (kDa)

8.31

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	6 cut(s)	170, 183, 365, 378, 506, 529
AcsI	RAATTY	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	25, 228, 287, 304, 393, 610
AjnI	CCWGG	2 cut(s)	208, 514
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	2 cut(s)	295, 442
Alw26I	GTCTC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	6 cut(s)	170, 183, 365, 378, 506, 529
Ama87I	CYCGRG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	373
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	326, 389, 570
AsuII	TTCGAA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	433
BaeGI	GKGCMC	2 cut(s)	295, 559
BamHI	GGATCC	2 cut(s)	175, 370
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	2 cut(s)	295, 442
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	3 cut(s)	232, 496, 507
BciT130I	CCWGG	2 cut(s)	210, 516
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	117, 273
BlsI	GCNGC	2 cut(s)	118, 274
Bme1390I	CCNGG	2 cut(s)	210, 516
BmeT110I	CYCGRG	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	177, 372
BmrFI	CCNGG	2 cut(s)	210, 516
BmsI	GCATC	2 cut(s)	148, 346
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	210, 516
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	96, 550
BseSI	GKGCMC	2 cut(s)	295, 559
BseXI	GCAGC	1 cut(s)	284
BseYI	CCCAGC	2 cut(s)	476, 558
BsiHKAI	GWGCWC	2 cut(s)	295, 442
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	361, 519
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	361, 519
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	295, 442, 559
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	5 cut(s)	175, 370, 511, 521, 541
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	2 cut(s)	97, 549
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	177, 372
BspPI	GGATC	6 cut(s)	170, 183, 365, 378, 506, 529
BspQI	GCTCTTC	1 cut(s)	594
BspT104I	TTCGAA	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	5 cut(s)	175, 370, 511, 521, 541
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	210, 516
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	150, 594
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	105, 536
BstDSI	CCRYGG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	178, 373, 514, 524, 544
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	5 cut(s)	175, 370, 511, 521, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	210, 516
BstSCI	CCNGG	2 cut(s)	208, 514
BstSLI	GKGCMC	2 cut(s)	295, 559
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	3 cut(s)	175, 370, 511
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	3 cut(s)	175, 370, 511
BtgI	CCRYGG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	41
CviAII	CATG	4 cut(s)	55, 149, 218, 296
CviJI	RGCY	6 cut(s)	109, 116, 275, 300, 480, 562
CviKI_1	RGCY	6 cut(s)	109, 116, 275, 300, 480, 562
DdeI	CTNAG	2 cut(s)	105, 536
DpnI	GATC	5 cut(s)	177, 372, 513, 523, 543
DpnII	GATC	5 cut(s)	175, 370, 511, 521, 541
Eam1104I	CTCTTC	2 cut(s)	150, 594
EarI	CTCTTC	2 cut(s)	150, 594
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	208, 514
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	4 cut(s)	58, 152, 221, 299
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	2 cut(s)	361, 519
FatI	CATG	4 cut(s)	54, 148, 217, 295
Fnu4HI	GCNGC	2 cut(s)	117, 273
Fsp4HI	GCNGC	2 cut(s)	117, 273
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	117, 273
GsaI	CCCAGC	2 cut(s)	480, 562
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	58, 152, 221, 299
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	158, 467, 534, 598
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	326, 389, 570
Hpy166II	GTNNAC	2 cut(s)	293, 334
Hpy188I	TCNGA	2 cut(s)	237, 539
Hpy188III	TCNNGA	4 cut(s)	374, 433, 435, 525
Hpy8I	GTNNAC	2 cut(s)	293, 334
HpyAV	CCTTC	2 cut(s)	298, 464
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	88, 127, 221, 266, 272, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	105, 536
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	58, 152, 221, 299
HspAI	GCGC	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	175, 370, 511, 521, 541
LguI	GCTCTTC	1 cut(s)	594
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	148, 346
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	177, 372, 513, 523, 543
MboI	GATC	5 cut(s)	175, 370, 511, 521, 541
MboII	GAAGA	5 cut(s)	25, 167, 376, 483, 581
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	175, 370, 511
MhlI	GDGCHC	3 cut(s)	295, 442, 559
MluCI	AATT	6 cut(s)	28, 76, 222, 267, 318, 402
MlyI	GAGTC	3 cut(s)	167, 528, 592
MnlI	CCTC	5 cut(s)	3, 28, 216, 361, 461
MroI	TCCGGA	1 cut(s)	373
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	210, 516
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	210, 516
MwoI	GCNNNNNNNGC	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	5 cut(s)	175, 370, 511, 521, 541
NlaIII	CATG	4 cut(s)	58, 152, 221, 299
NlaIV	GGNNCC	2 cut(s)	177, 372
NspV	TTCGAA	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	118, 274
PleI	GAGTC	3 cut(s)	166, 528, 592
PpsI	GAGTC	3 cut(s)	166, 528, 592
PsiI	TTATAA	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	208, 514
PspFI	CCCAGC	2 cut(s)	476, 558
PspGI	CCWGG	2 cut(s)	208, 514
PspN4I	GGNNCC	2 cut(s)	177, 372
PsuI	RGATCY	3 cut(s)	175, 370, 511
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	117, 273
Sau3AI	GATC	5 cut(s)	175, 370, 511, 521, 541
SchI	GAGTC	3 cut(s)	167, 528, 592
ScrFI	CCNGG	2 cut(s)	210, 516
SduI	GDGCHC	3 cut(s)	295, 442, 559
SetI	ASST	6 cut(s)	184, 208, 277, 292, 549, 583
SfaNI	GCATC	2 cut(s)	148, 346
Sfr274I	CTCGAG	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	6 cut(s)	28, 76, 222, 267, 318, 402
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	208, 514
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	6 cut(s)	47, 142, 434, 470, 524, 549
TasI	AATT	6 cut(s)	28, 76, 222, 267, 318, 402
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	433
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.