Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006898.1

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

20686 .. 24471

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006898.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgattgagaggaagaatggtttgaaaaattttcagggcgctggttcgataaccatggggaatacttgttatctcaattcggtgttgcagtgcttgacatatactgagcctttagctgcctacttgcaaagtggcaggcatagaaattatgtagaagagtcaaagaacagcagggatccacctactggttttgctttaataagacctccaggacaccatgtaatttcaaagggtctgatagggttttgtgtgtttggaaatattgcaattgcagctcattatggtcaacgtgcacatggcttgaagggtgtctttataattgattttgatgttcaccacgggaatgggacaaatgatgctttctatgaggatccggatatagtcttcctttcaactcaccaaggtgtctttataattgattttgatgttcaccacgggaatgggacaaatgatgctttctatgaggatccggatatagtcttcctttcaactcaccaagacagtcttattgaaggaatgtacctgaaaccaagaccagcagaccaccattctcttctgaatacagagatcagaccaaactttcaaatgcaaattcatttcacaatctcaaccattccaccaaaaccggttagtcttgggattgatctcactgcaccgagtgattggacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

5.91

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	317, 413
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccIII	TCCGGA	2 cut(s)	373, 469
AclWI	GGATC	6 cut(s)	170, 183, 365, 378, 461, 474
AcsI	RAATTY	2 cut(s)	28, 591
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	625
AgsI	TTSAA	7 cut(s)	25, 228, 304, 393, 489, 512, 584
AjnI	CCWGG	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	116, 275
AluI	AGCT	2 cut(s)	116, 275
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	6 cut(s)	170, 183, 365, 378, 461, 474
Aor13HI	TCCGGA	2 cut(s)	373, 469
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	116, 272
ApoI	RAATTY	2 cut(s)	28, 591
AsiGI	ACCGGT	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	326, 389, 422, 485
BaeGI	GKGCMC	1 cut(s)	295
BamHI	GGATCC	3 cut(s)	175, 370, 466
BbsI	GAAGAC	2 cut(s)	376, 472
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	103, 284
BciT130I	CCWGG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	117, 273
BlsI	GCNGC	2 cut(s)	118, 274
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	3 cut(s)	177, 372, 468
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	346, 442
BpiI	GAAGAC	2 cut(s)	376, 472
BpmI	CTGGAG	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	54, 337, 400, 433
BsaWI	WCCGGW	3 cut(s)	373, 469, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	190
BseAI	TCCGGA	2 cut(s)	373, 469
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	4 cut(s)	54, 337, 400, 433
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	103, 284
BsgI	GTGCAG	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	374, 470, 626
BslFI	GGGAC	2 cut(s)	361, 457
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	361, 457
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	2 cut(s)	373, 469
Bsp143I	GATC	5 cut(s)	175, 370, 466, 567, 643
Bsp19I	CCATGG	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	2 cut(s)	373, 469
BspLI	GGNNCC	3 cut(s)	177, 372, 468
BspPI	GGATC	6 cut(s)	170, 183, 365, 378, 461, 474
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	4 cut(s)	54, 337, 400, 433
BssMI	GATC	5 cut(s)	175, 370, 466, 567, 643
BssT1I	CCWWGG	2 cut(s)	54, 400
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	150, 558
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	3 cut(s)	54, 337, 433
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	178, 373, 469, 570, 646
BstMBI	GATC	5 cut(s)	175, 370, 466, 567, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	103, 284
BstV2I	GAAGAC	2 cut(s)	376, 472
BstX2I	RGATCY	3 cut(s)	175, 370, 466
BstXI	CCANNNNNNTGG	2 cut(s)	344, 440
BstYI	RGATCY	3 cut(s)	175, 370, 466
BtgI	CCRYGG	3 cut(s)	54, 337, 433
BtsI	GCAGTG	2 cut(s)	95, 648
BtsIMutI	CAGTG	2 cut(s)	95, 648
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	520
CspAI	ACCGGT	1 cut(s)	625
CviAII	CATG	3 cut(s)	55, 218, 296
CviJI	RGCY	4 cut(s)	109, 116, 275, 300
CviKI_1	RGCY	4 cut(s)	109, 116, 275, 300
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	5 cut(s)	177, 372, 468, 569, 645
DpnII	GATC	5 cut(s)	175, 370, 466, 567, 643
DraIII	CACNNNGTG	1 cut(s)	659
Eam1104I	CTCTTC	2 cut(s)	150, 558
EarI	CTCTTC	2 cut(s)	150, 558
Eco130I	CCWWGG	2 cut(s)	54, 400
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	54, 400
ErhI	CCWWGG	2 cut(s)	54, 400
FaeI	CATG	3 cut(s)	58, 221, 299
FalI	AAGNNNNNCTT	4 cut(s)	296, 328, 489, 521
FaqI	GGGAC	2 cut(s)	361, 457
FatI	CATG	3 cut(s)	54, 217, 295
Fnu4HI	GCNGC	2 cut(s)	117, 273
Fsp4HI	GCNGC	2 cut(s)	117, 273
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	117, 273
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	3 cut(s)	374, 470, 626
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	58, 221, 299
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	3 cut(s)	374, 470, 626
HphI	GGTGA	4 cut(s)	326, 389, 422, 485
Hpy166II	GTNNAC	4 cut(s)	287, 293, 334, 430
Hpy188I	TCNGA	3 cut(s)	237, 558, 572
Hpy188III	TCNNGA	2 cut(s)	374, 470
Hpy8I	GTNNAC	4 cut(s)	287, 293, 334, 430
HpyAV	CCTTC	2 cut(s)	298, 506
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	7 cut(s)	88, 127, 266, 272, 293, 589, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	58, 221, 299
HspAI	GCGC	1 cut(s)	39
Kpn2I	TCCGGA	2 cut(s)	373, 469
Kzo9I	GATC	5 cut(s)	175, 370, 466, 567, 643
Lsp1109I	GCAGC	2 cut(s)	103, 284
LweI	GCATC	2 cut(s)	346, 442
MaeII	ACGT	1 cut(s)	289
MalI	GATC	5 cut(s)	177, 372, 468, 569, 645
MboI	GATC	5 cut(s)	175, 370, 466, 567, 643
MboII	GAAGA	5 cut(s)	25, 167, 376, 472, 545
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	3 cut(s)	175, 370, 466
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	8 cut(s)	28, 76, 145, 222, 267, 318, 414, 591
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	3, 216, 361, 457
MroI	TCCGGA	2 cut(s)	373, 469
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	3 cut(s)	342, 402, 438
MspI	CCGG	3 cut(s)	374, 470, 626
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	5 cut(s)	175, 370, 466, 567, 643
NlaIII	CATG	3 cut(s)	58, 221, 299
NlaIV	GGNNCC	3 cut(s)	177, 372, 468
OliI	CACNNNNGTG	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	118, 274
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PsiI	TTATAA	2 cut(s)	317, 413
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	177, 372, 468
PsuI	RGATCY	3 cut(s)	175, 370, 466
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	3 cut(s)	342, 402, 438
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	117, 273
Sau3AI	GATC	5 cut(s)	175, 370, 466, 567, 643
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	7 cut(s)	118, 184, 208, 277, 292, 406, 525
SfaNI	GCATC	2 cut(s)	346, 442
SmiMI	CAYNNNNRTG	3 cut(s)	342, 402, 438
Sse9I	AATT	8 cut(s)	28, 76, 145, 222, 267, 318, 414, 591
SspI	AATATT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	2 cut(s)	54, 400
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	47
TasI	AATT	8 cut(s)	28, 76, 145, 222, 267, 318, 414, 591
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	2 cut(s)	95, 655
TseI	GCWGC	2 cut(s)	116, 272
TspDTI	ATGAA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	95, 655
Van91I	CCANNNNNTGG	1 cut(s)	185
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	2 cut(s)	28, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.