Rmu_sc0006376.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006376.1
OG0009730
Physical Location & Seq
Reverse (-)
28462 .. 33090
4629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006376.1_g000007.1.cds

Sequence Viewer

Length: 276 bp
atggtggccggctcatctcggaggtgtagcctggcattgactcgtcggaggaaggcgaagaagatggtggttacggcaaagaaatccaaggaggatttgaaggaagcctgcaggtctctcttgtttcatgattttgtggcaaactgcttgacaaaagaacatcgggttcaggcgcgaagaagagtgacggagtatttggtatatgttgttactgacatgacggcggcaatggaggaggaggatgctgaggttgtggcggtggaggagggggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.35

Weight (kDa)

9.15

Isoelectric Point (pI)

71.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AccII CGCG 1 cut(s) 175
AciI CCGC 2 cut(s) 224, 257
AcoI YGGCCR 1 cut(s) 6
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 120
AoxI GGCC 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspLEI GCGC 1 cut(s) 175
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 58
BceAI ACGGC 2 cut(s) 90, 237
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 102
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 2 cut(s) 248, 251
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 120
BspACI CCGC 2 cut(s) 224, 257
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 10, 109
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 10, 109
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 8
CviAII CATG 2 cut(s) 128, 217
CviJI RGCY 4 cut(s) 8, 12, 30, 107
CviKI_1 RGCY 4 cut(s) 8, 12, 30, 107
DdeI CTNAG 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 131, 220
FaiI YATR 4 cut(s) 129, 202, 204, 218
FatI CATG 2 cut(s) 127, 216
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 225
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 131, 220
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 21, 48
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 46, 94
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 2 cut(s) 131, 220
HspAI GCGC 1 cut(s) 173
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 17, 22, 44, 97, 121, 155
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 3 cut(s) 70, 184, 208
MboII GAAGA 4 cut(s) 70, 73, 189, 192
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 9 cut(s) 15, 42, 85, 226, 229, 232, 241, 256, 259
MroNI GCCGGC 1 cut(s) 8
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 175
NaeI GCCGGC 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 131, 220
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PstI CTGCAG 1 cut(s) 113
SatI GCNGC 1 cut(s) 225
SbfI CCTGCAGG 1 cut(s) 113
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 32
SdaI CCTGCAGG 1 cut(s) 113
SetI ASST 3 cut(s) 26, 116, 252
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 109
Sse8387I CCTGCAGG 1 cut(s) 113
SsiI CCGC 2 cut(s) 224, 257
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 87
TauI GCSGC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.