Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

36823018 .. 36823919

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGACTCGCGGTAACCAGAGAGAGAAGGATCGGGAGAGAGCTCAGGCTCGGGGCGGCAAGGGCAGCAAGAACAAAGACGATGGCTTGACCCCAGAACAGCGCCGAGAGAGGGATGCCAAAGCACTTCAAGAAAAGCTGGCCAAGAAGGCTGATAAGGGTGCAGGGGCTGCCGGAGCTAACTCCTCCTCTGGAGGTAAAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

68

Amino Acids

7.24

Weight (kDa)

10.39

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SERF-like_N	PF04419	1 - 35	1.8e-10	Small EDRK-rich factor 1/2-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	9, 54
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	3 cut(s)	41, 136, 176
AluI	AGCT	3 cut(s)	41, 136, 176
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	63, 167
AspLEI	GCGC	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	75, 154
BccI	CCATC	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	3 cut(s)	55, 64, 168
BlsI	GCNGC	3 cut(s)	56, 65, 169
BmeT110I	CYCGRG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	172, 175
BseXI	GCAGC	2 cut(s)	75, 154
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	9, 54
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	36
BssMI	GATC	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 63, 146, 167, 173
BstPI	GGTNACC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	75, 154
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	102
CviJI	RGCY	8 cut(s)	41, 47, 84, 136, 140, 149, 167, 176
CviKI_1	RGCY	8 cut(s)	41, 47, 84, 136, 140, 149, 167, 176
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	55, 64, 168
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	55, 64, 168
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	55, 64, 168
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	32, 128, 189
HpyAV	CCTTC	2 cut(s)	19, 139
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 63, 146, 167, 173
HpyF3I	CTNAG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	29, 29, 105, 122, 147, 174, 184
Lsp1109I	GCAGC	2 cut(s)	75, 154
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	4 cut(s)	102, 185, 193, 196
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	60, 63, 146, 167, 173
NdeII	GATC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	56, 65, 169
Psp124BI	GAGCTC	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	43
SatI	GCNGC	3 cut(s)	55, 64, 168
Sau3AI	GATC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	4 cut(s)	43, 138, 178, 196
SfaNI	GCATC	1 cut(s)	103
SsiI	CCGC	2 cut(s)	9, 54
SstI	GAGCTC	1 cut(s)	43
TauI	GCSGC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	63, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.