Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

27000932 .. 27002575

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCCAGCTACGCCACGGTCGACGGCGTCGTAGCTTCCGCGGTCCGCTCAATTTTCTACCCCGATGGAACCCCTCAGGAGAAACGACTAAGGAGAGATTTGCTCAAGGAAAGATCCGATTCAATTGATGGTAGAAGAGTCAAAGAACAGCAGGGTCCACCTACCAATTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAGCGTGCACATGGCTTGAAGGGTGTTTTTATAATTGATTTTGATGTTCAACACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCCGATATATTCTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

123

Amino Acids

13.62

Weight (kDa)

6.96

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	55 - 123	3.1e-27	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	41
AciI	CCGC	3 cut(s)	39, 41, 46
AclWI	GGATC	3 cut(s)	108, 344, 357
AcyI	GRCGYC	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	123, 283, 314
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	9, 35, 254
AluI	AGCT	3 cut(s)	9, 35, 254
Alw21I	GWGCWC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	3 cut(s)	108, 344, 357
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	43, 155, 212
AvaII	GGWCC	3 cut(s)	43, 155, 212
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	3 cut(s)	59, 122, 211
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	3 cut(s)	43, 155, 212
BmgT120I	GGNCC	3 cut(s)	43, 155, 212
BmiI	GGNNCC	4 cut(s)	70, 156, 213, 351
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	15, 39
Bse21I	CCTNAGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	15, 39
BseMII	CTCAG	2 cut(s)	89, 278
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	113, 349
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	39, 41, 46
BspCNI	CTCAG	2 cut(s)	88, 277
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	70, 156, 213, 351
BspPI	GGATC	3 cut(s)	108, 344, 357
BsrBI	CCGCTC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	15, 39
BssMI	GATC	2 cut(s)	113, 349
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	75, 89, 264
BstDSI	CCRYGG	2 cut(s)	15, 39
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	116, 352
BstMBI	GATC	2 cut(s)	113, 349
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 260, 269
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	113, 349
BstYI	RGATCY	2 cut(s)	113, 349
Bsu36I	CCTNAGG	1 cut(s)	75
BtgI	CCRYGG	2 cut(s)	15, 39
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	43, 155, 212
Cfr42I	CCGCGG	1 cut(s)	42
CpoI	CGGWCCG	1 cut(s)	43
CseI	GACGC	1 cut(s)	16
CspI	CGGWCCG	1 cut(s)	43
CviAII	CATG	2 cut(s)	197, 275
CviJI	RGCY	4 cut(s)	9, 35, 254, 279
CviKI_1	RGCY	4 cut(s)	9, 35, 254, 279
DdeI	CTNAG	3 cut(s)	75, 89, 264
DpnI	GATC	2 cut(s)	115, 351
DpnII	GATC	2 cut(s)	113, 349
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	43, 155, 212
Eco81I	CCTNAGG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	200, 278
FaiI	YATR	6 cut(s)	198, 261, 276, 296, 345, 359
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	196, 274
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	200, 278
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	119, 138
Hpy166II	GTNNAC	3 cut(s)	22, 158, 272
Hpy188I	TCNGA	2 cut(s)	118, 216
Hpy188III	TCNNGA	2 cut(s)	77, 353
Hpy8I	GTNNAC	3 cut(s)	22, 158, 272
Hpy99I	CGWCG	2 cut(s)	26, 32
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	200, 245, 251, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 260, 269
HpyF3I	CTNAG	3 cut(s)	75, 89, 264
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	200, 278
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	113, 349
LpnPI	CCDG	5 cut(s)	19, 62, 137, 174, 201
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	325
MalI	GATC	2 cut(s)	115, 351
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	2 cut(s)	113, 349
MboII	GAAGA	2 cut(s)	147, 355
MfeI	CAATTG	2 cut(s)	123, 246
MflI	RGATCY	2 cut(s)	113, 349
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	6 cut(s)	51, 123, 166, 201, 246, 297
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	84, 195, 340
MseI	TTAA	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	123, 246
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	251, 260, 269
NdeII	GATC	2 cut(s)	113, 349
NlaIII	CATG	2 cut(s)	200, 278
NlaIV	GGNNCC	4 cut(s)	70, 156, 213, 351
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 27
PfeI	GAWTC	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	4 cut(s)	70, 156, 213, 351
PspPI	GGNCC	3 cut(s)	43, 155, 212
PsuI	RGATCY	2 cut(s)	113, 349
PsyI	GACNNNGTC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	321
Rsr2I	CGGWCCG	1 cut(s)	43
RsrII	CGGWCCG	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	113, 349
Sau96I	GGNCC	3 cut(s)	43, 155, 212
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	11, 37, 163, 187, 256
SfaNI	GCATC	1 cut(s)	325
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	3 cut(s)	43, 155, 212
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	6 cut(s)	51, 123, 166, 201, 246, 297
SsiI	CCGC	3 cut(s)	39, 41, 46
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	21
TasI	AATT	6 cut(s)	51, 123, 166, 201, 246, 297
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseI	GCWGC	1 cut(s)	251
Tth111I	GACNNNGTC	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	3 cut(s)	43, 155, 212
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.