Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

36820264 .. 36821287

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTAGGCTCTCATGGATTTCCATTGCTTTCTTTGTCATCCTTGCCTTCGCAATCAATACTTTGGCTCAATGGGATATCGATCAAAGTCCTGCTCCTGCTGTTCAAATTGTTCCTTGCCCCTTTCGAACTTTTATGATAAATTTGATCTCTCATGTGTATTTAACTTGTTTCTTGAATATTTACAGCAAGGCGGAGAAGGATCGCTTAAACCTGAAGAATGCGCGGGAGCGTGTGATTTTCGGTGTTCAGCAACTTCACACAAGAATCCATGTCTGTTCTTTTGCAATATGTGTTGTAAAAAATGTCTCTGTGTCCCATCGGGCACATATGGACACAAAGAAGAATGTCCATGCTACAACAACTGGAAAACCCAGGAAGGAGGTCCCAAATGCCCTTGAAGATATAATTGCAATAAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

9.42

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	194, 226
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	107, 178, 401
AjnI	CCWGG	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	328
BccI	CCATC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	376
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	301, 371
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	301, 371
BsmI	GAATGC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	82, 147, 202
BspACI	CCGC	2 cut(s)	194, 226
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	3 cut(s)	82, 147, 202
Bst2UI	CCWGG	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	85, 150, 205
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	3 cut(s)	82, 147, 202
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	81
CviAII	CATG	4 cut(s)	15, 155, 272, 353
CviJI	RGCY	3 cut(s)	5, 10, 68
CviKI_1	RGCY	3 cut(s)	5, 10, 68
DpnI	GATC	3 cut(s)	84, 149, 204
DpnII	GATC	3 cut(s)	82, 147, 202
EciI	GGCGGA	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	79
FaeI	CATG	4 cut(s)	18, 158, 275, 356
FaiI	YATR	9 cut(s)	16, 137, 156, 273, 292, 330, 332, 354, 407
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	2 cut(s)	301, 371
FatI	CATG	4 cut(s)	14, 154, 271, 352
FauI	CCCGC	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	330
FokI	GGATG	1 cut(s)	26
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	18, 158, 275, 356
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	58, 193, 373
HpyCH4V	TGCA	2 cut(s)	287, 413
Hsp92II	CATG	4 cut(s)	18, 158, 275, 356
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	82, 147, 202
LmnI	GCTCC	2 cut(s)	100, 229
LpnPI	CCDG	6 cut(s)	105, 111, 227, 351, 361, 388
MaeI	CTAG	1 cut(s)	6
MalI	GATC	3 cut(s)	84, 149, 204
MboI	GATC	3 cut(s)	82, 147, 202
MboII	GAAGA	3 cut(s)	229, 355, 413
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	3 cut(s)	108, 142, 408
MnlI	CCTC	1 cut(s)	376
MseI	TTAA	2 cut(s)	164, 209
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	3 cut(s)	82, 147, 202
NlaIII	CATG	4 cut(s)	18, 158, 275, 356
NlaIV	GGNNCC	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	127
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	164, 209
Sau3AI	GATC	3 cut(s)	82, 147, 202
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	2 cut(s)	216, 387
SfuI	TTCGAA	1 cut(s)	127
SinI	GGWCC	1 cut(s)	385
Sse9I	AATT	3 cut(s)	108, 142, 408
SsiI	CCGC	2 cut(s)	194, 226
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	374
TaqI	TCGA	2 cut(s)	81, 127
TasI	AATT	3 cut(s)	108, 142, 408
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	164, 209
Tru9I	TTAA	2 cut(s)	164, 209
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.