RchiOBHm_Chr1g0355631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014842
Physical Location & Seq
Forward (+)
48274901 .. 48275846
946 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58109

Sequence Viewer

Length: 243 bp
ATGGGTCAAGCACTGAGACTGGCTGCCTTGTTCTTGGGTGTCCAGATCAGTGTAATGGGGTACCCACGAGATTTATGGAAGATCTGGGTTTGGGACCCAGGAATTAATGATCTGCCTTTTTATCTTGCCGGATTTTGGTGGTGTTCCGCCTCCGGGAGAGTGATCTCTGATCATATTCAAGGGCGAGGAGGAGAGGATCGAGTAGGCCTGGGCACGGGCCGGGACCACATGTCAATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.92

Weight (kDa)

6.7

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 204
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 135, 153, 214
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 179
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 97, 207
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 205, 217
ApeKI GCWGC 1 cut(s) 23
AseI ATTAAT 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 94, 217, 223
AsuC2I CCSGG 2 cut(s) 154, 221
AvaII GGWCC 2 cut(s) 94, 223
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 99, 209
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 2 cut(s) 154, 221
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 241
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 4 cut(s) 99, 154, 209, 221
Bme18I GGWCC 2 cut(s) 94, 223
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 94, 217, 223
BmiI GGNNCC 4 cut(s) 62, 95, 96, 224
BmrFI CCNGG 4 cut(s) 99, 154, 209, 221
BpuMI CCSGG 2 cut(s) 154, 221
BsaJI CCNNGG 2 cut(s) 97, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 153, 214
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 99, 209
BseDI CCNNGG 2 cut(s) 97, 208
BseLI CCNNNNNNNGG 3 cut(s) 135, 153, 214
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 201, 204
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 2 cut(s) 207, 219
BshNI GGYRCC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 129, 153, 220
BslFI GGGAC 2 cut(s) 107, 236
BslI CCNNNNNNNGG 3 cut(s) 135, 153, 214
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 2 cut(s) 107, 236
BsnI GGCC 2 cut(s) 207, 219
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 6 cut(s) 45, 81, 109, 162, 169, 196
BspACI CCGC 1 cut(s) 147
BspANI GGCC 2 cut(s) 207, 219
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 4 cut(s) 62, 95, 96, 224
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 97, 208
BssMI GATC 6 cut(s) 45, 81, 109, 162, 169, 196
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 99, 209
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 6 cut(s) 48, 84, 112, 165, 172, 199
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 6 cut(s) 45, 81, 109, 162, 169, 196
BstNI CCWGG 2 cut(s) 99, 209
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 97, 152, 207, 219
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 2 cut(s) 207, 219
BtsIMutI CAGTG 2 cut(s) 11, 55
Cfr13I GGNCC 3 cut(s) 94, 217, 223
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 229
CviJI RGCY 3 cut(s) 23, 207, 219
CviKI_1 RGCY 3 cut(s) 23, 207, 219
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 14
DpnI GATC 6 cut(s) 47, 83, 111, 164, 171, 198
DpnII GATC 6 cut(s) 45, 81, 109, 162, 169, 196
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
EciI GGCGGA 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 94, 223
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 97, 207
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 76, 174, 230
FaqI GGGAC 2 cut(s) 107, 236
FatI CATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 241
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 207, 219
HapII CCGG 3 cut(s) 129, 153, 220
Hin1II CATG 1 cut(s) 232
HpaII CCGG 3 cut(s) 129, 153, 220
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 232
KflI GGGWCCC 1 cut(s) 94
KpnI GGTACC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 45, 81, 109, 162, 169, 196
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 241
MalI GATC 6 cut(s) 47, 83, 111, 164, 171, 198
MboI GATC 6 cut(s) 45, 81, 109, 162, 169, 196
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 102, 234
MnlI CCTC 4 cut(s) 160, 179, 182, 187
MseI TTAA 1 cut(s) 105
MspI CCGG 3 cut(s) 129, 153, 220
MspR9I CCNGG 4 cut(s) 99, 154, 209, 221
MvaI CCWGG 2 cut(s) 99, 209
NciI CCSGG 2 cut(s) 154, 221
NdeII GATC 6 cut(s) 45, 81, 109, 162, 169, 196
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 4 cut(s) 62, 95, 96, 224
NspI RCATGY 1 cut(s) 232
PceI AGGCCT 1 cut(s) 207
PciI ACATGT 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 94
PscI ACATGT 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 97, 207
PspGI CCWGG 2 cut(s) 97, 207
PspN4I GGNNCC 4 cut(s) 62, 95, 96, 224
PspPI GGNCC 3 cut(s) 94, 217, 223
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 6 cut(s) 45, 81, 109, 162, 169, 196
Sau96I GGNCC 3 cut(s) 94, 217, 223
ScrFI CCNGG 4 cut(s) 99, 154, 209, 221
SduI GDGCHC 1 cut(s) 215
SinI GGWCC 2 cut(s) 94, 223
Sse9I AATT 2 cut(s) 102, 234
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 241
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 4 cut(s) 97, 152, 207, 219
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 102, 234
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 18, 55
TseI GCWGC 1 cut(s) 23
TspRI CASTG 2 cut(s) 18, 55
VpaK11BI GGWCC 2 cut(s) 94, 223
VspI ATTAAT 1 cut(s) 105
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.