RLG00000036823

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014842
Physical Location & Seq
Reverse (-)
85242334 .. 85243116
783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036823

Sequence Viewer

Length: 375 bp
ATGGCTCAGCTTCAGGCGGCCACCACGGCGGGGTCGTCTTCTTTGCCTAGTGAGGAGACCCGAGATCGGGCTCAAGTGGCGTCTCCCTTCTTCTATGGATTGGAAGATTTTCGAAAGAGGCACAGGAATGGTAGCAGCGTTGTGGCTACTGTGGGTGCAGACAGACAGCAACAATGGTCGTGCTCCAGTGCCGATTCTGGGATTTTTGTGGTGTTCTGCCACCAGGAGAGTGATCTCCAGTCATATTCAAGGGCAAGGAGGAGAAGATTGGACTTGGGTCGTTTGGGCCTTAGTTCGAATGTGGTGGGATGCTCAAGTGCAGGCTCCAAACAGTGGACTGGTGGCGTGGGCTTGTTATCAAACCATATCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.38

Weight (kDa)

9.41

Isoelectric Point (pI)

76.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 333
AciI CCGC 2 cut(s) 17, 29
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 30, 66, 67, 198, 333
AgsI TTSAA 1 cut(s) 249
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 50, 87
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 18, 286
ApeKI GCWGC 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 286
AsuII TTCGAA 2 cut(s) 112, 296
AvaI CYCGRG 1 cut(s) 60
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 50, 87
BfaI CTAG 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 18, 136
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 19, 137
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 299
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 169, 221
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 2 cut(s) 112, 296
BpuEI CTTGAG 2 cut(s) 57, 298
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 1 cut(s) 353
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 66, 67, 198, 333
Bse1I ACTGG 3 cut(s) 186, 238, 343
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 5 cut(s) 30, 66, 67, 198, 333
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 3 cut(s) 186, 238, 343
BseRI GAGGAG 2 cut(s) 68, 274
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 2 cut(s) 177, 339
BshFI GGCC 2 cut(s) 20, 288
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 5 cut(s) 30, 66, 67, 198, 333
BsmAI GTCTC 2 cut(s) 50, 87
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 2 cut(s) 20, 288
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 2 cut(s) 112, 296
Bsp1286I GDGCHC 2 cut(s) 73, 185
Bsp143I GATC 2 cut(s) 64, 232
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 17, 29
BspANI GGCC 2 cut(s) 20, 288
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 325
BspT104I TTCGAA 2 cut(s) 112, 296
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 3 cut(s) 186, 238, 343
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 64, 232
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 151, 333
BstACI GRCGYC 1 cut(s) 80
BstBI TTCGAA 2 cut(s) 112, 296
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 6, 290
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 67, 235
BstMAI GTCTC 2 cut(s) 50, 87
BstMBI GATC 2 cut(s) 64, 232
BstMWI GCNNNNNNNGC 2 cut(s) 26, 77
BstNI CCWGG 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 20, 288
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 193, 338
Cac8I GCNNGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 69
CviJI RGCY 8 cut(s) 5, 10, 20, 71, 146, 288, 324, 351
CviKI_1 RGCY 8 cut(s) 5, 10, 20, 71, 146, 288, 324, 351
DdeI CTNAG 2 cut(s) 6, 290
DpnI GATC 2 cut(s) 66, 234
DpnII GATC 2 cut(s) 64, 232
EaeI YGGCCR 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 87
FaiI YATR 3 cut(s) 96, 244, 366
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 18, 136
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 18, 136
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 18, 136
GsuI CTGGAG 2 cut(s) 169, 221
HaeIII GGCC 2 cut(s) 20, 288
HgaI GACGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 80
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 151, 333
HpyCH4V TGCA 2 cut(s) 158, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 77
HpyF3I CTNAG 2 cut(s) 6, 290
Hsp92I GRCGYC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 64, 232
LmnI GCTCC 2 cut(s) 188, 329
LpnPI CCDG 8 cut(s) 109, 183, 199, 209, 236, 251, 306, 324
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 299
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 66, 234
MboI GATC 2 cut(s) 64, 232
MboII GAAGA 4 cut(s) 30, 82, 116, 276
MhlI GDGCHC 2 cut(s) 73, 185
MnlI CCTC 3 cut(s) 46, 111, 252
MroXI GAANNNNTTC 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 26, 77
NdeII GATC 2 cut(s) 64, 232
NlaIV GGNNCC 1 cut(s) 325
NspV TTCGAA 2 cut(s) 112, 296
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 2 cut(s) 19, 137
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 126
SatI GCNGC 2 cut(s) 18, 136
Sau3AI GATC 2 cut(s) 64, 232
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 73, 185
SetI ASST 1 cut(s) 12
SfaNI GCATC 1 cut(s) 299
SfuI TTCGAA 2 cut(s) 112, 296
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 72, 313
SmoI CTYRAG 2 cut(s) 72, 313
SsiI CCGC 2 cut(s) 17, 29
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 151, 333
TaqI TCGA 2 cut(s) 112, 296
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 193, 338
TseI GCWGC 1 cut(s) 135
TspRI CASTG 2 cut(s) 193, 338
Van91I CCANNNNNTGG 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.