RchiOBHm_Chr6g0275341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014842
Physical Location & Seq
Forward (+)
37136167 .. 37137333
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24703

Sequence Viewer

Length: 663 bp
ATGGTCGCCAACGATGGTGGTCCAGAGTCAATAACCGCAGAGTCATTGCAGAATGGAGCCTTGCTTTGGTGGAAGGTCATGATTCTGTGGCTGTTGTGGGTGCAGATCGACGGCGGCGACGGGATGGATCAAGCATTGAGTCTGGGTGCCTTGTTCTTGGGTGTCCAGATCAGTGTGATGGGGTACTCACGAGATTTATGGAAGATCTGGGTTTGGGACCCAGAAATTAATGATCTGCCCATTTGTCTTGCCGGATTTTGGTGGTGTTCCGACTCCGGGAGAGTAATCTCCAGTCATATTCAAGGGCGAGGAGGAGAGGATCGAGTTTGCATCGTTTGGGCCTTAGTTCGAATATGGTGGTTTACTCAAGTGCAGGCTCAGGACAGTGGACTGGTGGCGTGGACTTGTTTTCAACAAACCATATCTTGTAACCTGCTGGATCTTACATTTGTGGGAAACTCTTTGCAATCTACTAGTATTTTCGTACACCAATTGAGGTCTCTAGGTGAACTTACTTGTTGTTCAGTTGTTTCGAGTCATGTATCTTTCACTAGGTTACGATTTTCTCTTGTTTGTCGCTTGTCTAATTGTGCGCATTTGTTTACAATGAGGGTCACATGTCATATGTTTGGCAACTTATGCCATTTAGAACTTTTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.73

Weight (kDa)

5.58

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 594
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 2 cut(s) 36, 114
AclWI GGATC 3 cut(s) 135, 327, 447
AfaI GTAC 2 cut(s) 185, 486
AfiI CCNNNNNNNGG 3 cut(s) 66, 258, 276
AflIII ACRYGT 1 cut(s) 617
AgsI TTSAA 2 cut(s) 302, 413
AhlI ACTAGT 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 3 cut(s) 135, 327, 447
AoxI GGCC 1 cut(s) 339
AseI ATTAAT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 3 cut(s) 20, 217, 339
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 518
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 2 cut(s) 20, 217
BanI GGYRCC 1 cut(s) 146
BauI CACGAG 1 cut(s) 189
BccI CCATC 3 cut(s) 8, 118, 172
BceAI ACGGC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 504
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 3 cut(s) 474, 503, 552
BfuAI ACCTGC 1 cut(s) 441
BglII AGATCT 1 cut(s) 204
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 20, 217
BmgT120I GGNCC 3 cut(s) 20, 217, 339
BmiI GGNNCC 4 cut(s) 58, 148, 218, 219
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 504
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 258, 276
Bse1I ACTGG 2 cut(s) 291, 396
Bse3DI GCAATG 1 cut(s) 44
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 66, 258, 276
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 2 cut(s) 291, 396
BseRI GAGGAG 2 cut(s) 324, 327
BsgI GTGCAG 2 cut(s) 122, 392
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 252, 276
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 66, 258, 276
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 341
Bso31I GGTCTC 1 cut(s) 504
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
BspACI CCGC 2 cut(s) 36, 114
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 4 cut(s) 58, 148, 218, 219
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 3 cut(s) 135, 327, 447
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 44
BsrI ACTGG 2 cut(s) 291, 396
BssMI GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 639
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 343, 378
BstF5I GGATG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 7 cut(s) 108, 130, 171, 207, 235, 322, 442
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
BstMWI GCNNNNNNNGC 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 275
BstX2I RGATCY 2 cut(s) 204, 439
BstYI RGATCY 2 cut(s) 204, 439
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 178, 391
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 78
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 3 cut(s) 20, 217, 339
Csp6I GTAC 2 cut(s) 184, 485
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 3 cut(s) 79, 539, 618
CviJI RGCY 4 cut(s) 59, 91, 341, 377
CviKI_1 RGCY 4 cut(s) 59, 91, 341, 377
CviQI GTAC 2 cut(s) 184, 485
DdeI CTNAG 2 cut(s) 343, 378
DpnI GATC 7 cut(s) 107, 129, 170, 206, 234, 321, 441
DpnII GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
Eco31I GGTCTC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 20, 217
EcoO109I RGGNCCY 1 cut(s) 217
FaeI CATG 3 cut(s) 82, 542, 621
FaqI GGGAC 1 cut(s) 230
FatI CATG 3 cut(s) 78, 538, 617
FauNDI CATATG 1 cut(s) 624
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 115
FspAI RTGCGCAY 1 cut(s) 594
FspBI CTAG 3 cut(s) 474, 503, 552
FspI TGCGCA 1 cut(s) 594
GlaI GCGC 1 cut(s) 594
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 1 cut(s) 341
HapII CCGG 2 cut(s) 252, 276
HhaI GCGC 1 cut(s) 595
Hin1II CATG 3 cut(s) 82, 542, 621
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HinfI GANTC 6 cut(s) 26, 41, 82, 139, 272, 535
HpaII CCGG 2 cut(s) 252, 276
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 6 cut(s) 363, 389, 402, 487, 509, 603
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 5 cut(s) 23, 79, 166, 189, 380
Hpy8I GTNNAC 6 cut(s) 363, 389, 402, 487, 509, 603
Hpy99I CGWCG 2 cut(s) 113, 122
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 5 cut(s) 49, 103, 330, 373, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 639
HpyF3I CTNAG 2 cut(s) 343, 378
Hsp92II CATG 3 cut(s) 82, 542, 621
HspAI GCGC 1 cut(s) 593
KflI GGGWCCC 1 cut(s) 217
Kzo9I GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
LmnI GCTCC 1 cut(s) 56
LweI GCATC 1 cut(s) 339
MaeI CTAG 3 cut(s) 474, 503, 552
MaeIII GTNAC 3 cut(s) 428, 555, 613
MalI GATC 7 cut(s) 107, 129, 170, 206, 234, 321, 441
MboI GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
MboII GAAGA 1 cut(s) 214
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 2 cut(s) 204, 439
MluCI AATT 3 cut(s) 225, 491, 586
MlyI GAGTC 5 cut(s) 35, 50, 148, 266, 544
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 302, 305, 310, 489, 603
MseI TTAA 1 cut(s) 228
MspI CCGG 2 cut(s) 252, 276
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 639
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 624
NdeII GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
NlaIII CATG 3 cut(s) 82, 542, 621
NlaIV GGNNCC 4 cut(s) 58, 148, 218, 219
NmuCI GTSAC 1 cut(s) 613
NsbI TGCGCA 1 cut(s) 594
NspI RCATGY 1 cut(s) 621
NspV TTCGAA 1 cut(s) 349
PagI TCATGA 1 cut(s) 78
PciI ACATGT 1 cut(s) 617
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 5 cut(s) 34, 49, 147, 266, 543
PpsI GAGTC 5 cut(s) 34, 49, 147, 266, 543
PpuMI RGGWCCY 1 cut(s) 217
PscI ACATGT 1 cut(s) 617
PshBI ATTAAT 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 4 cut(s) 58, 148, 218, 219
PspPI GGNCC 3 cut(s) 20, 217, 339
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 2 cut(s) 204, 439
RsaI GTAC 2 cut(s) 185, 486
RsaNI GTAC 2 cut(s) 184, 485
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 7 cut(s) 105, 127, 168, 204, 232, 319, 439
Sau96I GGNCC 3 cut(s) 20, 217, 339
SchI GAGTC 5 cut(s) 35, 50, 148, 266, 544
ScrFI CCNGG 1 cut(s) 277
SetI ASST 5 cut(s) 78, 435, 500, 508, 557
SfaNI GCATC 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 2 cut(s) 20, 217
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 3 cut(s) 225, 491, 586
SsiI CCGC 2 cut(s) 36, 114
SspMI CTAG 3 cut(s) 474, 503, 552
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 4 cut(s) 108, 322, 349, 533
TasI AATT 3 cut(s) 225, 491, 586
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 178, 391
TseFI GTSAC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 613
TspRI CASTG 2 cut(s) 178, 391
VpaK11BI GGWCC 2 cut(s) 20, 217
VspI ATTAAT 1 cut(s) 228
XceI RCATGY 1 cut(s) 621
XspI CTAG 3 cut(s) 474, 503, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.