Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014842

Physical Location & Seq

Genomic Coordinates Reverse (-)

15121706 .. 15122115

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGCAGCTTCCAGGGAGGTCTTTGCCACCTCTATATACTCGTCGATTGCACCAGGCTCTTGATCAACCCTTTCCTTGTTTCGGGGAAGGGTGGATTGTATGCTTTTTGGATTGGCTCAGCTTTCGTGGGGATGGCTCCTTGGTTGGGGGAGGAGACCCGAGATCAGAGTCATTGCTGAATGGAGCTGAAGCCGGAGCCTTGCTTTGGTGGAAGGTCATGATTCTGTGGCTGTTGTGGGTGCAGATCGACCACGGTGACGGCATTGGTCAAGCACTGAGTCTAGGTGCCTTGTTCTTGGGTGTCCAGATCAGTGTGATGGGGTACTCACGAGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.46

Weight (kDa)

5.07

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355631 RchiOBHm_Chr6g0275341
rosa_laevigata	RLG00000000647 RLG00000004040 RLG00000008396 RLG00000009225 RLG00000013232 RLG00000017309 RLG00000018491 RLG00000019618 RLG00000032526 RLG00000033789 RLG00000035841 RLG00000036823
rosa_multiflora	Rmu_sc0000706.1_g000011
rosa_roxburghii	Rroxscaffold_1G00021970
rosa_samantha	Rh7DG140300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	83, 147, 207
AjnI	CCWGG	2 cut(s)	13, 54
AluBI	AGCT	3 cut(s)	10, 123, 188
AluI	AGCT	3 cut(s)	10, 123, 188
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	128, 313
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	15, 56
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	284, 340
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	8
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	15, 56
BmeT110I	CYCGRG	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	139, 199, 289
BmrFI	CCNGG	2 cut(s)	15, 56
Bpu1102I	GCTNAGC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	14, 141, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 147, 207
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	15, 56
BseDI	CCNNGG	3 cut(s)	14, 141, 253
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	83, 147, 207
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	133, 269
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	2 cut(s)	26, 263
BshNI	GGYRCC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	83, 147, 207
BsmAI	GTCTC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	160
Bsp143I	GATC	5 cut(s)	64, 164, 246, 309, 334
Bsp1720I	GCTNAGC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	132, 270
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	139, 199, 289
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	14, 141, 253
BssMI	GATC	5 cut(s)	64, 164, 246, 309, 334
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	15, 56
Bst4CI	ACNGT	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	119, 278
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	5 cut(s)	67, 167, 249, 312, 337
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	5 cut(s)	64, 164, 246, 309, 334
BstNI	CCWGG	2 cut(s)	15, 56
BstSCI	CCNGG	2 cut(s)	13, 54
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	275, 319
CciI	TCATGA	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	9 cut(s)	10, 59, 118, 123, 138, 188, 194, 200, 232
CviKI_1	RGCY	9 cut(s)	10, 59, 118, 123, 138, 188, 194, 200, 232
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	119, 278
DpnI	GATC	5 cut(s)	66, 166, 248, 311, 336
DpnII	GATC	5 cut(s)	64, 164, 246, 309, 334
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	13, 54
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	37, 39, 103, 221
FatI	CATG	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	284, 340
GluI	GCNGC	1 cut(s)	8
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	3 cut(s)	170, 223, 280
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	62, 220, 307, 330
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	83, 208
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	7, 52, 244
HpyF3I	CTNAG	2 cut(s)	119, 278
Hsp92II	CATG	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	64, 164, 246, 309, 334
LmnI	GCTCC	3 cut(s)	143, 185, 197
LpnPI	CCDG	5 cut(s)	27, 41, 68, 208, 320
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	284, 340
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	5 cut(s)	66, 166, 248, 311, 336
MboI	GATC	5 cut(s)	64, 164, 246, 309, 334
MflI	RGATCY	1 cut(s)	334
MlyI	GAGTC	2 cut(s)	179, 289
MnlI	CCTC	3 cut(s)	12, 42, 146
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	15, 56
MvaI	CCWGG	2 cut(s)	15, 56
NdeII	GATC	5 cut(s)	64, 164, 246, 309, 334
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	139, 199, 289
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	178, 288
PpsI	GAGTC	2 cut(s)	178, 288
Psp6I	CCWGG	2 cut(s)	13, 54
PspGI	CCWGG	2 cut(s)	13, 54
PspN4I	GGNNCC	3 cut(s)	139, 199, 289
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	5 cut(s)	64, 164, 246, 309, 334
SchI	GAGTC	2 cut(s)	179, 289
ScrFI	CCNGG	2 cut(s)	15, 56
SetI	ASST	7 cut(s)	12, 23, 34, 125, 190, 219, 289
SspMI	CTAG	2 cut(s)	284, 340
StyD4I	CCNGG	2 cut(s)	13, 54
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	46, 249
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	2 cut(s)	282, 319
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	257
TspRI	CASTG	2 cut(s)	282, 319
XspI	CTAG	2 cut(s)	284, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.