Rroxscaffold_1G00021970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014842
Physical Location & Seq
Reverse (-)
27049928 .. 27050299
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021970.1

Sequence Viewer

Length: 372 bp
ATGGCCTGGCTTTCGGGGAGGCCTTTGCCGCCTCCATATCCTCGTCCGCACCAGGTTGTTGATCAACCCTTTCCTCGTTTCGTGGAATGGTACACCGTATGTTGTTTGGATTGGCTTAGCTTCGGGCGGGATGGCTTCGTGTCCGGGGGAGGAGACCGAGATCGGGTTCGAGCGGCGTCTCCCCTCGCTTATAGGGATTGGAAGATCATTGACAGAGGCACAAGCATGGCAGCGAGTCATTGCAGAATGGAGTCGAGCCTTGCTTTGTTGGAAGATCATGATGCTCCGTCGTTGTGGGTGCCGATCGACGGCGGCGACGGGGATTGGTCAAGCACCGAGTCCGGATGTCCGGTTCTTGGGGGTCCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.57

Weight (kDa)

4.97

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 5 cut(s) 29, 47, 127, 173, 312
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 163, 308, 356
AjnI CCWGG 2 cut(s) 5, 51
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 147, 183
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 2 cut(s) 3, 20
ApeKI GCWGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 7, 53
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 147, 183
BisI GCNGC 4 cut(s) 29, 174, 231, 313
BlpI GCTNAGC 1 cut(s) 116
BlsI GCNGC 4 cut(s) 30, 175, 232, 314
Bme1390I CCNGG 3 cut(s) 7, 53, 145
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 300, 363
BmrFI CCNGG 3 cut(s) 7, 53, 145
BmsI GCATC 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 2 cut(s) 341, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 308, 356
Bse3DI GCAATG 1 cut(s) 238
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 7, 53
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 136, 350
BseLI CCNNNNNNNGG 3 cut(s) 163, 308, 356
BseMI GCAATG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 5, 22
BshNI GGYRCC 1 cut(s) 298
BsiEI CGRYCG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 144, 342, 350
BslI CCNNNNNNNGG 3 cut(s) 163, 308, 356
BsmAI GTCTC 2 cut(s) 147, 183
BsmBI CGTCTC 1 cut(s) 183
BsnI GGCC 2 cut(s) 5, 22
Bso31I GGTCTC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 5 cut(s) 61, 160, 204, 274, 303
Bsp1720I GCTNAGC 1 cut(s) 116
BspACI CCGC 5 cut(s) 29, 47, 127, 173, 312
BspANI GGCC 2 cut(s) 5, 22
BspEI TCCGGA 1 cut(s) 341
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 300, 363
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 5 cut(s) 61, 160, 204, 274, 303
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 7, 53
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 136, 350
BstKTI GATC 5 cut(s) 64, 163, 207, 277, 306
BstMAI GTCTC 2 cut(s) 147, 183
BstMBI GATC 5 cut(s) 61, 160, 204, 274, 303
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 2 cut(s) 7, 53
BstSCI CCNGG 3 cut(s) 5, 51, 143
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 5, 22
BtsCI GGATG 2 cut(s) 136, 350
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 165
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 91
CviAII CATG 2 cut(s) 226, 278
CviJI RGCY 7 cut(s) 5, 10, 22, 115, 120, 135, 258
CviKI_1 RGCY 7 cut(s) 5, 10, 22, 115, 120, 135, 258
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 116
DpnI GATC 5 cut(s) 63, 162, 206, 276, 305
DpnII GATC 5 cut(s) 61, 160, 204, 274, 303
Eco147I AGGCCT 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 5, 51
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 2 cut(s) 229, 281
FaiI YATR 5 cut(s) 37, 100, 192, 227, 279
FatI CATG 2 cut(s) 225, 277
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 29, 174, 231, 313
FokI GGATG 2 cut(s) 143, 357
Fsp4HI GCNGC 4 cut(s) 29, 174, 231, 313
GluI GCNGC 4 cut(s) 29, 174, 231, 313
HaeIII GGCC 2 cut(s) 5, 22
HapII CCGG 3 cut(s) 144, 342, 350
HgaI GACGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 229, 281
HinfI GANTC 3 cut(s) 235, 251, 338
HpaII CCGG 3 cut(s) 144, 342, 350
Hpy166II GTNNAC 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 278, 342
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 3 cut(s) 292, 311, 320
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 229, 281
Kpn2I TCCGGA 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 160, 204, 274, 303
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 19, 38, 65, 157, 355, 363
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 271
MabI ACCWGGT 1 cut(s) 51
MalI GATC 5 cut(s) 63, 162, 206, 276, 305
MbiI CCGCTC 1 cut(s) 173
MboI GATC 5 cut(s) 61, 160, 204, 274, 303
MboII GAAGA 2 cut(s) 214, 284
MluCI AATT 1 cut(s) 367
MlyI GAGTC 3 cut(s) 244, 260, 347
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 7 cut(s) 12, 42, 51, 84, 143, 194, 209
MroI TCCGGA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 3 cut(s) 144, 342, 350
MspR9I CCNGG 3 cut(s) 7, 53, 145
MvaI CCWGG 2 cut(s) 7, 53
MwoI GCNNNNNNNGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 145
NdeII GATC 5 cut(s) 61, 160, 204, 274, 303
NlaIII CATG 2 cut(s) 229, 281
NlaIV GGNNCC 2 cut(s) 300, 363
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PkrI GCNGC 4 cut(s) 30, 175, 232, 314
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 3 cut(s) 243, 259, 346
PpsI GAGTC 3 cut(s) 243, 259, 346
Psp6I CCWGG 2 cut(s) 5, 51
PspGI CCWGG 2 cut(s) 5, 51
PspN4I GGNNCC 2 cut(s) 300, 363
PspPI GGNCC 1 cut(s) 362
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 4 cut(s) 29, 174, 231, 313
Sau3AI GATC 5 cut(s) 61, 160, 204, 274, 303
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 3 cut(s) 244, 260, 347
ScrFI CCNGG 3 cut(s) 7, 53, 145
SetI ASST 2 cut(s) 57, 122
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 367
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 5 cut(s) 29, 47, 127, 173, 312
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 3 cut(s) 5, 51, 143
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 169, 254, 306
TaqII GACCGA 1 cut(s) 171
TasI AATT 1 cut(s) 367
TauI GCSGC 3 cut(s) 31, 176, 315
TseI GCWGC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.