Rh7DG140300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014842
Physical Location & Seq
Forward (+)
11952758 .. 11952964
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG140300.1

Sequence Viewer

Length: 207 bp
ATGATGCTGTGGTTGTTGTGGGTGCCGATCGATGGCGGCGACGGGATTGGTCAAGCACTGAGTCTAGATGTCGTGTTCTTGGAGGTCCAGATCAATGGGATGGGGTACTCACGAGATCTATGGAAGATCTGGGTTTGGGACCCAGGAATTAACGATCTGCCTGTTGGTTTTGCCGATTTTGGTGGTGTTCCTCCACCGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.46

Weight (kDa)

4.05

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 1 cut(s) 36
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 32, 197
AjnI CCWGG 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 85, 139
AsuC2I CCSGG 1 cut(s) 198
AvaII GGWCC 2 cut(s) 85, 139
BanI GGYRCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 111
BccI CCATC 2 cut(s) 26, 94
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 65
BglII AGATCT 2 cut(s) 115, 126
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 2 cut(s) 144, 198
Bme18I GGWCC 2 cut(s) 85, 139
BmgT120I GGNCC 2 cut(s) 85, 139
BmiI GGNNCC 3 cut(s) 24, 140, 141
BmrFI CCNGG 2 cut(s) 144, 198
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 197
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 32, 197
BseMII CTCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 32, 197
BsmFI GGGAC 1 cut(s) 152
Bsp143I GATC 5 cut(s) 27, 90, 115, 126, 154
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 24, 140, 141
BspT107I GGYRCC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 5 cut(s) 27, 90, 115, 126, 154
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 5 cut(s) 30, 93, 118, 129, 157
BstMBI GATC 5 cut(s) 27, 90, 115, 126, 154
BstMCI CGRYCG 1 cut(s) 30
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 142, 196
BstX2I RGATCY 2 cut(s) 115, 126
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 2 cut(s) 115, 126
Bsu15I ATCGAT 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 85, 139
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 1 cut(s) 106
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 59
DpnI GATC 5 cut(s) 29, 92, 117, 128, 156
DpnII GATC 5 cut(s) 27, 90, 115, 126, 154
Eco47I GGWCC 2 cut(s) 85, 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 1 cut(s) 121
FaqI GGGAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 37
HapII CCGG 1 cut(s) 197
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 197
Hpy188III TCNNGA 3 cut(s) 65, 88, 111
Hpy99I CGWCG 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 59
KflI GGGWCCC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 27, 90, 115, 126, 154
LpnPI CCDG 5 cut(s) 101, 115, 129, 156, 174
MaeI CTAG 1 cut(s) 65
MalI GATC 5 cut(s) 29, 92, 117, 128, 156
MboI GATC 5 cut(s) 27, 90, 115, 126, 154
MboII GAAGA 1 cut(s) 136
MflI RGATCY 2 cut(s) 115, 126
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 76, 201
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 144, 198
MvaI CCWGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 198
NdeII GATC 5 cut(s) 27, 90, 115, 126, 154
NlaIV GGNNCC 3 cut(s) 24, 140, 141
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PkrI GCNGC 1 cut(s) 38
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 24, 140, 141
PspPI GGNCC 2 cut(s) 85, 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 2 cut(s) 115, 126
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 5 cut(s) 27, 90, 115, 126, 154
Sau96I GGNCC 2 cut(s) 85, 139
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 144, 198
SetI ASST 1 cut(s) 87
SinI GGWCC 2 cut(s) 85, 139
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 142, 196
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 63
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 85, 139
XbaI TCTAGA 1 cut(s) 64
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.