RLG00000009225

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014842
Physical Location & Seq
Forward (+)
49356802 .. 49357246
445 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009225

Sequence Viewer

Length: 333 bp
ATGAGAGTCGAGAGCCTTTTCTCGAAAAACCCTAGCGCCGCCCCCTTGGTGCGGCTTCCAGGGAGGTCTTTGTCGCCTCCACATACTCGACGATTGTGTCATGCCGTAGATCGACTCTTTTCTCATTTCGGGGAAGGGTGGATTGCACATTGCTTGGCAGTGCTTGCTGATTTTCGATGGCAGCACAGGGATGTTAACAGCGATGTTGCAGAACGGAGCCGAGGTCCTGCTTTTATAGAAGGTGGTGATATTGACGACGCTGGAGTCGTTGTTATGGCCAGTGATGGTGGCCTGGATGCAGTCGGAGATGGAGGCACTGTTTCTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.75

Weight (kDa)

5.88

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 96, 263
AciI CCGC 2 cut(s) 39, 52
AcoI YGGCCR 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 51
AjnI CCWGG 2 cut(s) 58, 291
AoxI GGCC 2 cut(s) 276, 289
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 171, 278, 302
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 60, 293
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 3 cut(s) 39, 53, 182
BlsI GCNGC 3 cut(s) 40, 54, 183
Bme1390I CCNGG 2 cut(s) 60, 293
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 60, 293
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 45, 59, 220
BsaXI ACNNNNNCTCC 6 cut(s) 208, 238, 255, 285, 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 2 cut(s) 60, 293
BseDI CCNNGG 3 cut(s) 45, 59, 220
BseGI GGATG 2 cut(s) 196, 301
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 278, 291
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 2 cut(s) 278, 291
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 39, 52
BspANI GGCC 2 cut(s) 278, 291
BspLI GGNNCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 45, 59, 220
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 60, 293
Bst4CI ACNGT 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 2 cut(s) 196, 301
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 60, 293
BstSCI CCNGG 2 cut(s) 58, 291
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 278, 291
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 196, 301
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 165, 286, 315
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 266
CviAII CATG 1 cut(s) 101
CviJI RGCY 5 cut(s) 15, 55, 219, 278, 291
CviKI_1 RGCY 5 cut(s) 15, 55, 219, 278, 291
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DrdI GACNNNNNNGTC 2 cut(s) 96, 263
DseDI GACNNNNNNGTC 2 cut(s) 96, 263
EaeI YGGCCR 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 58, 291
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 104
FaiI YATR 4 cut(s) 84, 102, 236, 275
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 39, 53, 182
FokI GGATG 2 cut(s) 203, 308
Fsp4HI GCNGC 3 cut(s) 39, 53, 182
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 53, 182
GsuI CTGGAG 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 278, 291
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 6, 114, 264
HpaI GTTAAC 1 cut(s) 196
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 2 cut(s) 10, 22
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 2 cut(s) 93, 260
HpyAV CCTTC 2 cut(s) 128, 233
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 146, 209, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 8 cut(s) 45, 72, 172, 240, 246, 278, 292, 305
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 33
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 3 cut(s) 15, 108, 273
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 4 cut(s) 57, 87, 215, 305
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 60, 293
MvaI CCWGG 2 cut(s) 60, 293
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 218
NmeAIII GCCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PkrI GCNGC 3 cut(s) 40, 54, 183
PleI GAGTC 3 cut(s) 14, 108, 272
PpsI GAGTC 3 cut(s) 14, 108, 272
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 58, 291
PspGI CCWGG 2 cut(s) 58, 291
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 39, 53, 182
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 3 cut(s) 15, 108, 273
ScrFI CCNGG 2 cut(s) 60, 293
SetI ASST 3 cut(s) 68, 226, 244
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 39, 52
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 58, 291
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 9, 23, 88, 112, 175
TasI AATT 1 cut(s) 328
TauI GCSGC 2 cut(s) 41, 55
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 165, 286, 322
TseI GCWGC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 3 cut(s) 165, 286, 322
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.