RLG00000018491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014842
Physical Location & Seq
Reverse (-)
30678690 .. 30679076
387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018491

Sequence Viewer

Length: 387 bp
ATGGTAGCAGAGTCATTGCTGAATGGAGCCGGAGCCTTGCTTTGGTGGAAGGTCATGATACTGTGGCTGTTATGGGTGCAGAACGACGGCGGCGACAGGATTGGTCAAGCACTGCGTTTGGATACCTTGTTCTTGGGTATCCAAATGAGTGTGATGGAAGATTTGGGTTTGGGACCCAGGAAAAAACGATATGCCCTTTTGTTTTACTGGATTTTGGTGGTGTTCTGCCACCGAGAGAGTAGTCTCCGATCATATTCAAGGGCAAGGAGAAGAGGATCGAGCTTGGGTCGTTTGGGCCTTAGTTCGAATGTGGTGGTTTACTCAAATGCAGGCTCAGGACAGAGGACTAGTGGCTTGGACTTGTTTTCAACAAACCATATCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

10.34

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 258, 369
AhlI ACTAGT 1 cut(s) 347
AjnI CCWGG 1 cut(s) 176
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 283
AoxI GGCC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 173, 295
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 382
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 1 cut(s) 348
BfuI GTATCC 2 cut(s) 115, 149
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 173, 295
BmiI GGNNCC 4 cut(s) 28, 34, 174, 175
BmrFI CCNGG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 248, 275
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 347
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 28, 34, 174, 175
BspPI GGATC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 2 cut(s) 248, 275
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 299, 334
BstKTI GATC 2 cut(s) 251, 278
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 248, 275
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BsuI GTATCC 2 cut(s) 115, 149
BsuRI GGCC 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 331
CciI TCATGA 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 173, 295
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 29, 35, 67, 282, 297, 333, 354
CviKI_1 RGCY 7 cut(s) 29, 35, 67, 282, 297, 333, 354
DdeI CTNAG 2 cut(s) 299, 334
DpnI GATC 2 cut(s) 250, 277
DpnII GATC 2 cut(s) 248, 275
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 58
FaiI YATR 5 cut(s) 56, 73, 192, 253, 378
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 30
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 55, 336, 384
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 79, 329
HpyF3I CTNAG 2 cut(s) 299, 334
Hsp92II CATG 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 248, 275
LmnI GCTCC 2 cut(s) 26, 32
LpnPI CCDG 7 cut(s) 43, 82, 163, 190, 193, 315, 321
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 250, 277
MboI GATC 2 cut(s) 248, 275
MboII GAAGA 2 cut(s) 170, 282
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 266, 336
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
NdeII GATC 2 cut(s) 248, 275
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 4 cut(s) 28, 34, 174, 175
NspV TTCGAA 1 cut(s) 305
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 4 cut(s) 28, 34, 174, 175
PspPI GGNCC 2 cut(s) 173, 295
PspPPI RGGWCCY 1 cut(s) 173
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 2 cut(s) 248, 275
Sau96I GGNCC 2 cut(s) 173, 295
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 178
SetI ASST 3 cut(s) 54, 128, 284
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 173
SpeI ACTAGT 1 cut(s) 347
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 278, 305
TauI GCSGC 1 cut(s) 93
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 173
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.