RLG00000033789

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014842
Physical Location & Seq
Reverse (-)
32194234 .. 32196439
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033789

Sequence Viewer

Length: 573 bp
ATGAGAGTCGAGAGTCTCTCCTCGACAAACCCTAGCGCTGCCCCCTTGGGGTGGCTTCCAGGGTGGCCTTTGCCACCTCCACATACGCGTCGATTGCACCAGGCTGTTGATCGGCCCTTTCCTCGTTTCAGGGAAGGGTGGATTAGACCCAAGATCGGGTTCGAGCAGCGTCTCCCTTCTTATAGGGATTGGAAGATCTTCGATGGAGCCACAGGAATGGTAGCAGAGTCATTGCTGAATGGAGCCGGAGCCTTACTTTGGTGGAAGGTCATGATATTGTGGCTGTTGTGGGTGCAGATTGACGGCGGCGACGGGATTGGTCAAGCACTGAGTCTGGGTGCCTTGTTCTTAGGTGTCTACATTAGTGAATTAATGATCTGCCCTTTTGTTTTGCCGGATTTTGGTGGTGTTCCCCATCGGGAGCGTAGTCTCCGGTCATATTCAAGGGCGAGGAGGAGAGGATCGAGCTTGGGTCGTTTGGGCCTTAGTTCGAATGTGGTGGTTTGCTCAAGTGCAGGCTCAGGACAGTGGACTGGTGGCTTGGACTTGTTTTCAACAAATCATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.0

Weight (kDa)

10.24

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 88
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 469
AfeI AGCGCT 1 cut(s) 37
AfiI CCNNNNNNNGG 6 cut(s) 48, 51, 155, 156, 258, 401
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 444, 555
AjnI CCWGG 2 cut(s) 58, 99
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
Alw26I GTCTC 3 cut(s) 20, 176, 434
AlwI GGATC 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 3 cut(s) 65, 113, 481
ApeKI GCWGC 2 cut(s) 38, 166
AseI ATTAAT 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 114, 481
AsuII TTCGAA 1 cut(s) 491
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 25, 178
BccI CCATC 2 cut(s) 197, 423
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 60, 101
BcoDI GTCTC 3 cut(s) 20, 176, 434
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 39
BglII AGATCT 1 cut(s) 195
BisI GCNGC 3 cut(s) 39, 167, 307
BlsI GCNGC 3 cut(s) 40, 168, 308
Bme1390I CCNGG 2 cut(s) 60, 101
BmgT120I GGNCC 2 cut(s) 114, 481
BmiI GGNNCC 4 cut(s) 208, 244, 250, 340
BmrFI CCNGG 2 cut(s) 60, 101
BplI GAGNNNNNCTC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 493
BsaJI CCNNGG 2 cut(s) 45, 59
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 51, 155, 156, 258, 401
Bse1I ACTGG 1 cut(s) 538
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 2 cut(s) 60, 101
BseDI CCNNGG 2 cut(s) 45, 59
BseLI CCNNNNNNNGG 6 cut(s) 48, 51, 155, 156, 258, 401
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 320, 534
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 3 cut(s) 10, 466, 469
BseXI GCAGC 2 cut(s) 25, 178
BsgI GTGCAG 2 cut(s) 314, 534
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 67, 115, 483
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 3 cut(s) 246, 395, 433
BslI CCNNNNNNNGG 6 cut(s) 48, 51, 155, 156, 258, 401
BsmAI GTCTC 3 cut(s) 20, 176, 434
BsmBI CGTCTC 1 cut(s) 176
BsnI GGCC 3 cut(s) 67, 115, 483
Bsp119I TTCGAA 1 cut(s) 491
Bsp143I GATC 5 cut(s) 109, 153, 195, 375, 461
BspACI CCGC 1 cut(s) 306
BspANI GGCC 3 cut(s) 67, 115, 483
BspCNI CTCAG 2 cut(s) 321, 533
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 2 cut(s) 270, 569
BspLI GGNNCC 4 cut(s) 208, 244, 250, 340
BspPI GGATC 1 cut(s) 469
BspT104I TTCGAA 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 2 cut(s) 45, 59
BssMI GATC 5 cut(s) 109, 153, 195, 375, 461
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 60, 101
Bst4CI ACNGT 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 4 cut(s) 329, 349, 485, 520
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 5 cut(s) 112, 156, 198, 378, 464
BstMAI GTCTC 3 cut(s) 20, 176, 434
BstMBI GATC 5 cut(s) 109, 153, 195, 375, 461
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 2 cut(s) 60, 101
BstSCI CCNGG 2 cut(s) 58, 99
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 25, 178
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 3 cut(s) 67, 115, 483
BtsIMutI CAGTG 2 cut(s) 326, 533
Cac8I GCNNGC 1 cut(s) 517
CciI TCATGA 2 cut(s) 270, 569
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 114, 481
CseI GACGC 2 cut(s) 77, 158
CviAII CATG 2 cut(s) 271, 570
DdeI CTNAG 4 cut(s) 329, 349, 485, 520
DpnI GATC 5 cut(s) 111, 155, 197, 377, 463
DpnII GATC 5 cut(s) 109, 153, 195, 375, 461
Eco130I CCWWGG 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 58, 99
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 2 cut(s) 274, 573
FaiI YATR 6 cut(s) 84, 183, 272, 439, 564, 571
FatI CATG 2 cut(s) 270, 569
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 39, 167, 307
Fsp4HI GCNGC 3 cut(s) 39, 167, 307
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 167, 307
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 3 cut(s) 67, 115, 483
HapII CCGG 3 cut(s) 246, 395, 433
HgaI GACGC 2 cut(s) 77, 158
HhaI GCGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 274, 573
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 4 cut(s) 6, 13, 227, 331
HpaII CCGG 3 cut(s) 246, 395, 433
Hpy166II GTNNAC 2 cut(s) 358, 531
Hpy188III TCNNGA 5 cut(s) 10, 271, 419, 522, 570
Hpy8I GTNNAC 2 cut(s) 358, 531
Hpy99I CGWCG 2 cut(s) 93, 314
HpyAV CCTTC 3 cut(s) 128, 186, 259
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 97, 295, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 4 cut(s) 329, 349, 485, 520
Hsp92II CATG 2 cut(s) 274, 573
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 5 cut(s) 109, 153, 195, 375, 461
LmnI GCTCC 4 cut(s) 206, 242, 248, 421
Lsp1109I GCAGC 2 cut(s) 25, 178
MaeI CTAG 1 cut(s) 33
MalI GATC 5 cut(s) 111, 155, 197, 377, 463
MboI GATC 5 cut(s) 109, 153, 195, 375, 461
MboII GAAGA 2 cut(s) 190, 205
MflI RGATCY 1 cut(s) 195
MluCI AATT 1 cut(s) 368
MluI ACGCGT 1 cut(s) 86
MlyI GAGTC 4 cut(s) 15, 22, 236, 340
MnlI CCTC 6 cut(s) 31, 87, 132, 444, 447, 452
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 3 cut(s) 246, 395, 433
MspR9I CCNGG 2 cut(s) 60, 101
MvaI CCWGG 2 cut(s) 60, 101
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 5 cut(s) 109, 153, 195, 375, 461
NlaIII CATG 2 cut(s) 274, 573
NlaIV GGNNCC 4 cut(s) 208, 244, 250, 340
NspV TTCGAA 1 cut(s) 491
PagI TCATGA 2 cut(s) 270, 569
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 40, 168, 308
PleI GAGTC 4 cut(s) 14, 21, 235, 339
PpsI GAGTC 4 cut(s) 14, 21, 235, 339
PshBI ATTAAT 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 58, 99
PspGI CCWGG 2 cut(s) 58, 99
PspN4I GGNNCC 4 cut(s) 208, 244, 250, 340
PspPI GGNCC 2 cut(s) 114, 481
PsuI RGATCY 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 3 cut(s) 39, 167, 307
Sau3AI GATC 5 cut(s) 109, 153, 195, 375, 461
Sau96I GGNCC 2 cut(s) 114, 481
SchI GAGTC 4 cut(s) 15, 22, 236, 340
ScrFI CCNGG 2 cut(s) 60, 101
SetI ASST 4 cut(s) 79, 270, 355, 470
SfuI TTCGAA 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 1 cut(s) 368
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 58, 99
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 7 cut(s) 9, 23, 91, 162, 201, 464, 491
TasI AATT 1 cut(s) 368
TauI GCSGC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 2 cut(s) 333, 533
TseI GCWGC 2 cut(s) 38, 166
TspRI CASTG 2 cut(s) 333, 533
VspI ATTAAT 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.