RLG00000035841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014842
Physical Location & Seq
Reverse (-)
72520498 .. 72521467
970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035841

Sequence Viewer

Length: 627 bp
ATGTCTGGATCATGGAGATCAACAAGTAGCATTGATACCTCAAGGTTTTTGCTCAGATGTTGTCCTCAGTATGAAGTTCGGAACACCTTCAGAATCACTCTTTGGTTGGCTCAATTTCGAACTAAGACCACGGCAGGGACGCTTCCGTGGTCAAGGGAGGAGATCCGGGTTTGGGCTCGGGCAGCGACTTCCTTCCTACAGGGACTGGCGGATTTTCAATGGCGGAACTGGACTGTTGGTTGCGCTGGTGCAAAGAGGCGGCTGGGTCTTGATCTGTTTGGGATTGATGTTGGCGGCGTTGTCATTGAAGTGGCCAGGGATGGTGGCCAACGATGGTGGTCCGGAGTCAATAACCGCAGATTCATTGCAGAATGGAGCCTTGCTTTGTTGGAAGGTCATGATTCTGTGGCCGTTGTGGTGCAGATCGACGGCGGTGACGGGATAGGTCAAGCACTGAGTCTGGGTGCCTTGTTCTTGGGTGTCCAGATCAGTGTGATGGGGTACCCACGAGATTTATGGAAGATCTGGGTTTGGGACCCAAGAATTAATGATCTGCCCTTTTGTCTTGCCGGATTTTGGTGGTGTTCCACCTACGGGAGAGTAATCTCAGGTCATATTCAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.54

Weight (kDa)

9.22

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 501
AccB1I GGYRCC 2 cut(s) 464, 501
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 6 cut(s) 209, 223, 259, 294, 355, 432
AclWI GGATC 2 cut(s) 16, 157
AcoI YGGCCR 3 cut(s) 312, 325, 408
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 4 cut(s) 135, 172, 576, 594
AgsI TTSAA 3 cut(s) 218, 308, 620
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AlwI GGATC 2 cut(s) 16, 157
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 3 cut(s) 312, 325, 408
ApeKI GCWGC 1 cut(s) 182
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 339, 535
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 446
AsuII TTCGAA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 2 cut(s) 339, 535
BalI TGGCCA 2 cut(s) 314, 327
BanI GGYRCC 2 cut(s) 464, 501
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 507
BbvI GCAGC 1 cut(s) 194
BccI CCATC 3 cut(s) 314, 327, 490
BceAI ACGGC 3 cut(s) 147, 395, 445
BciT130I CCWGG 1 cut(s) 316
BcnI CCSGG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 522
BisI GCNGC 3 cut(s) 183, 260, 295
BlsI GCNGC 3 cut(s) 184, 261, 296
Bme1390I CCNGG 2 cut(s) 167, 316
Bme18I GGWCC 2 cut(s) 339, 535
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 339, 535
BmiI GGNNCC 5 cut(s) 377, 466, 503, 536, 537
BmrFI CCNGG 2 cut(s) 167, 316
Bpu14I TTCGAA 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 129, 146, 315
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 172, 576, 594
Bse1I ACTGG 2 cut(s) 210, 233
Bse3DI GCAATG 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 129, 146, 315
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 4 cut(s) 135, 172, 576, 594
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 67, 80, 446, 621
BseNI ACTGG 2 cut(s) 210, 233
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 3 cut(s) 314, 327, 410
BshNI GGYRCC 2 cut(s) 464, 501
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 3 cut(s) 166, 342, 570
BslFI GGGAC 3 cut(s) 151, 216, 548
BslI CCNNNNNNNGG 4 cut(s) 135, 172, 576, 594
BsmFI GGGAC 3 cut(s) 151, 216, 548
BsnI GGCC 3 cut(s) 314, 327, 410
BsoBI CYCGRG 1 cut(s) 177
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 178
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
BspACI CCGC 6 cut(s) 209, 223, 259, 294, 355, 432
BspANI GGCC 3 cut(s) 314, 327, 410
BspCNI CTCAG 4 cut(s) 66, 79, 447, 620
BspEI TCCGGA 1 cut(s) 341
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 5 cut(s) 377, 466, 503, 536, 537
BspPI GGATC 2 cut(s) 16, 157
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 464, 501
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 210, 233
BssECI CCNNGG 3 cut(s) 129, 146, 315
BssMI GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 53, 66, 123, 455, 607
BstDSI CCRYGG 2 cut(s) 129, 146
BstF5I GGATG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 8 cut(s) 11, 20, 165, 274, 426, 489, 525, 553
BstMBI GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 165, 314
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 162, 522
BstYI RGATCY 2 cut(s) 162, 522
BsuRI GGCC 3 cut(s) 314, 327, 410
BtgI CCRYGG 2 cut(s) 129, 146
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 452, 496
CaiI CAGNNNCTG 1 cut(s) 205
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 339, 535
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 502
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 2 cut(s) 12, 398
CviJI RGCY 7 cut(s) 110, 176, 262, 314, 327, 378, 410
CviKI_1 RGCY 7 cut(s) 110, 176, 262, 314, 327, 378, 410
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 5 cut(s) 53, 66, 123, 455, 607
DpnI GATC 8 cut(s) 10, 19, 164, 273, 425, 488, 524, 552
DpnII GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
EaeI YGGCCR 3 cut(s) 312, 325, 408
EciI GGCGGA 2 cut(s) 224, 238
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 339, 535
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 2 cut(s) 15, 401
FaiI YATR 5 cut(s) 13, 72, 399, 517, 615
FaqI GGGAC 3 cut(s) 151, 216, 548
FatI CATG 2 cut(s) 11, 397
Fnu4HI GCNGC 3 cut(s) 183, 260, 295
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 183, 260, 295
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 183, 260, 295
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 3 cut(s) 314, 327, 410
HapII CCGG 3 cut(s) 166, 342, 570
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 15, 401
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 5 cut(s) 93, 345, 360, 401, 457
HpaII CCGG 3 cut(s) 166, 342, 570
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 56, 81, 92
Hpy188III TCNNGA 5 cut(s) 6, 269, 342, 398, 484
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 3 cut(s) 97, 202, 386
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 251, 368, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 5 cut(s) 53, 66, 123, 455, 607
Hsp92II CATG 2 cut(s) 15, 401
HspAI GCGC 1 cut(s) 243
KflI GGGWCCC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 341
KpnI GGTACC 1 cut(s) 505
Kzo9I GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 434
MalI GATC 8 cut(s) 10, 19, 164, 273, 425, 488, 524, 552
MboI GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
MboII GAAGA 1 cut(s) 532
MflI RGATCY 2 cut(s) 162, 522
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 2 cut(s) 314, 327
MluCI AATT 2 cut(s) 113, 543
MluNI TGGCCA 2 cut(s) 314, 327
MlyI GAGTC 2 cut(s) 354, 466
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 4 cut(s) 49, 75, 151, 249
Mox20I TGGCCA 2 cut(s) 314, 327
MroI TCCGGA 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 2 cut(s) 314, 327
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 2 cut(s) 314, 327
MspI CCGG 3 cut(s) 166, 342, 570
MspR9I CCNGG 2 cut(s) 167, 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 167
NdeII GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
NlaIII CATG 2 cut(s) 15, 401
NlaIV GGNNCC 5 cut(s) 377, 466, 503, 536, 537
NmuCI GTSAC 1 cut(s) 434
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 93, 360, 401
PkrI GCNGC 3 cut(s) 184, 261, 296
PleI GAGTC 2 cut(s) 353, 465
PpsI GAGTC 2 cut(s) 353, 465
PpuMI RGGWCCY 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 5 cut(s) 377, 466, 503, 536, 537
PspPI GGNCC 2 cut(s) 339, 535
PspPPI RGGWCCY 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 2 cut(s) 162, 522
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 3 cut(s) 183, 260, 295
Sau3AI GATC 8 cut(s) 8, 17, 162, 271, 423, 486, 522, 550
Sau96I GGNCC 2 cut(s) 339, 535
SchI GAGTC 2 cut(s) 354, 466
ScrFI CCNGG 2 cut(s) 167, 316
SduI GDGCHC 1 cut(s) 178
SetI ASST 7 cut(s) 41, 47, 89, 397, 448, 593, 613
SfcI CTRYAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 2 cut(s) 339, 535
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 2 cut(s) 113, 543
SsiI CCGC 6 cut(s) 209, 223, 259, 294, 355, 432
StyD4I CCNGG 2 cut(s) 165, 314
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 118, 426
TasI AATT 2 cut(s) 113, 543
TauI GCSGC 2 cut(s) 262, 297
TfiI GAWTC 3 cut(s) 93, 360, 401
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 459, 496
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 87, 352
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 459, 496
VpaK11BI GGWCC 2 cut(s) 339, 535
VspI ATTAAT 1 cut(s) 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.