Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000706.1

Orthogroup ID

OG0014842

Physical Location & Seq

Genomic Coordinates Reverse (-)

51149 .. 54099

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000706.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggtggattgcatgctgtttggattggctcagcttccagcagggatgatcgacggcggcgacgggattgatcaagcactaagtctggatgccgtgttcttgggggtccagataagtgggatggggtactcgcgagatctatggaagatctgggtttgggacccaggaattaacgatctacctgctggttttgccggattttggtggtgctccgccaccaggagagtagtctccggccatattcaagggcaaggaggagaggatcgagcttgggtcgtttgggccttagttcgaatgtggtgtcaacaaaccatatctcgtgacctgctggatcttacatttgtgggaggctttttgccatctgctagtattttcgtacaccaattgaggtctctaggcgaacttacttgttgttctgttgctttgagtcatgtatctttcactaggttgcggttttctcttgtttgtcgcttgtctaattgtgtgcatttgtttacaatgaggtccatgctaccaatggctaccagcaggaaggccgatgaagcctcctcttcatcctcaaatcattggatttatgaggttttcttgagcttcaggggagaagatacgcgcaagaacttcacggaccatctctacctggccttaaaggaggctggaatcaatgctttcattgaccacaaactggagaggggagagattatagatgaggaactgttgcgggtaatccaagggtccaaaatcagtggcatcgtcttctcaagtaggtatgcggattccacttggtgtcttgaggagctagacaagatcatggagtgtagaacagcactgggacagctagtccttctagtattctatgatgttgatccttcagatgtcctgaaacagagtggtagttttggagaggcatttgatcagaaacatggagacgaacatgaagataaggtcaagaggtggagaactgcacttactgaagctgcaactttgtctggctgggatcttaacaccacagctgatgggcatgaagggaaatttatcaggatgattattgaggagatcactaaatatctcaataacacagatttatatgtggcagacaatgaaactggaatagactctcgtatgcaagatattatttctcttttagatgttggaacatcacatgatgttcgcattcttggaatttgtgaacaatggtttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

400

Amino Acids

44.89

Weight (kDa)

5.0

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355631 RchiOBHm_Chr6g0275341
rosa_laevigata	RLG00000000647 RLG00000004040 RLG00000008396 RLG00000009225 RLG00000013232 RLG00000017309 RLG00000018491 RLG00000019618 RLG00000032526 RLG00000033789 RLG00000035841 RLG00000036823
rosa_multiflora	Rmu_sc0000706.1_g000011
rosa_roxburghii	Rroxscaffold_1G00021970
rosa_samantha	Rh7DG140300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	190, 333
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccII	CGCG	2 cut(s)	133, 610
AciI	CCGC	5 cut(s)	57, 213, 451, 718, 770
AclWI	GGATC	4 cut(s)	270, 339, 857, 1002
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	1028, 1179
AcuI	CTGAAG	3 cut(s)	577, 852, 990
AdeI	CACNNNGTG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	128, 378
AfiI	CCNNNNNNNGG	3 cut(s)	201, 219, 682
AgsI	TTSAA	1 cut(s)	245
AhdI	GACNNNNNGTC	1 cut(s)	836
AjnI	CCWGG	3 cut(s)	163, 218, 636
AjuI	GAANNNNNNNTTGG	1 cut(s)	1179
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	7 cut(s)	34, 269, 591, 796, 835, 974, 1010
AluI	AGCT	7 cut(s)	34, 269, 591, 796, 835, 974, 1010
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	3 cut(s)	235, 396, 918
AlwI	GGATC	4 cut(s)	270, 339, 857, 1002
AoxI	GGCC	4 cut(s)	235, 282, 534, 639
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	2 cut(s)	1028, 1179
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	6 cut(s)	106, 160, 282, 504, 625, 732
AsuII	TTCGAA	1 cut(s)	292
AvaII	GGWCC	5 cut(s)	106, 160, 504, 625, 732
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	961
BccI	CCATC	4 cut(s)	115, 367, 636, 1007
BceAI	ACGGC	2 cut(s)	70, 77
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	3 cut(s)	165, 220, 638
BclI	TGATCA	2 cut(s)	70, 910
BcoDI	GTCTC	3 cut(s)	235, 396, 918
BfaI	CTAG	6 cut(s)	366, 395, 444, 797, 836, 845
BfuAI	ACCTGC	2 cut(s)	190, 333
BglII	AGATCT	2 cut(s)	136, 147
BisI	GCNGC	2 cut(s)	58, 975
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	59, 976
Bme1390I	CCNGG	3 cut(s)	165, 220, 638
Bme18I	GGWCC	5 cut(s)	106, 160, 504, 625, 732
BmeRI	GACNNNNNGTC	1 cut(s)	836
BmgT120I	GGNCC	6 cut(s)	106, 160, 282, 504, 625, 732
BmiI	GGNNCC	4 cut(s)	107, 161, 162, 733
BmrFI	CCNGG	3 cut(s)	165, 220, 638
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	2 cut(s)	79, 756
BmuI	ACTGGG	1 cut(s)	836
BpiI	GAAGAC	1 cut(s)	745
BpmI	CTGGAG	1 cut(s)	704
Bpu1102I	GCTNAGC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	3 cut(s)	607, 742, 809
BsaBI	GATNNNNATC	1 cut(s)	861
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	163, 727
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 219, 682
Bse1I	ACTGG	3 cut(s)	687, 831, 1108
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	3 cut(s)	165, 220, 638
BseDI	CCNNGG	2 cut(s)	163, 727
BseGI	GGATG	5 cut(s)	51, 94, 126, 554, 1044
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	201, 219, 682
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	687, 831, 1108
BseRI	GAGGAG	4 cut(s)	270, 538, 806, 1064
BseXI	GCAGC	1 cut(s)	961
BseYI	CCCAGC	1 cut(s)	990
BsgI	GTGCAG	1 cut(s)	945
Bsh1236I	CGCG	2 cut(s)	133, 610
BshFI	GGCC	4 cut(s)	237, 284, 536, 641
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	195, 234
BslFI	GGGAC	2 cut(s)	173, 843
BslI	CCNNNNNNNGG	3 cut(s)	201, 219, 682
BsmAI	GTCTC	3 cut(s)	235, 396, 918
BsmBI	CGTCTC	1 cut(s)	918
BsmFI	GGGAC	2 cut(s)	173, 843
BsmI	GAATGC	1 cut(s)	1170
BsnI	GGCC	4 cut(s)	237, 284, 536, 641
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp1720I	GCTNAGC	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	133
BspACI	CCGC	5 cut(s)	57, 213, 451, 718, 770
BspANI	GGCC	4 cut(s)	237, 284, 536, 641
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	2 cut(s)	133, 610
BspLI	GGNNCC	4 cut(s)	107, 161, 162, 733
BspMI	ACCTGC	2 cut(s)	190, 333
BspPI	GGATC	4 cut(s)	270, 339, 857, 1002
BspT104I	TTCGAA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	687, 831, 1108
BssECI	CCNNGG	2 cut(s)	163, 727
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	727
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	165, 220, 638
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	30, 80, 286
BstF5I	GGATG	5 cut(s)	51, 94, 126, 554, 1044
BstFNI	CGCG	2 cut(s)	133, 610
BstHHI	GCGC	1 cut(s)	612
BstMAI	GTCTC	3 cut(s)	235, 396, 918
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 542
BstNI	CCWGG	3 cut(s)	165, 220, 638
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	163, 218, 636
BstUI	CGCG	2 cut(s)	133, 610
BstV1I	GCAGC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	745
BstX2I	RGATCY	4 cut(s)	136, 147, 331, 994
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	4 cut(s)	136, 147, 331, 994
BsuRI	GGCC	4 cut(s)	237, 284, 536, 641
BtsCI	GGATG	5 cut(s)	51, 94, 126, 554, 1044
BtsIMutI	CAGTG	2 cut(s)	748, 824
BtuMI	TCGCGA	1 cut(s)	133
BveI	ACCTGC	2 cut(s)	190, 333
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	6 cut(s)	106, 160, 282, 504, 625, 732
Csp6I	GTAC	2 cut(s)	127, 377
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	8 cut(s)	13, 431, 508, 808, 920, 932, 1019, 1160
CviQI	GTAC	2 cut(s)	127, 377
DdeI	CTNAG	3 cut(s)	30, 80, 286
DraIII	CACNNNGTG	1 cut(s)	783
DriI	GACNNNNNGTC	1 cut(s)	836
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	836
EarI	CTCTTC	1 cut(s)	556
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	727
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	5 cut(s)	106, 160, 504, 625, 732
Eco57I	CTGAAG	3 cut(s)	577, 852, 990
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	163, 218, 636
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
Esp3I	CGTCTC	1 cut(s)	918
FaeI	CATG	8 cut(s)	16, 434, 511, 811, 923, 935, 1022, 1163
FaqI	GGGAC	2 cut(s)	173, 843
FatI	CATG	8 cut(s)	12, 430, 507, 807, 919, 931, 1018, 1159
FauI	CCCGC	1 cut(s)	711
FbaI	TGATCA	2 cut(s)	70, 910
Fnu4HI	GCNGC	2 cut(s)	58, 975
FokI	GGATG	5 cut(s)	58, 101, 133, 541, 1051
Fsp4HI	GCNGC	2 cut(s)	58, 975
FspBI	CTAG	6 cut(s)	366, 395, 444, 797, 836, 845
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	2 cut(s)	58, 975
GsaI	CCCAGC	1 cut(s)	994
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	237, 284, 536, 641
HapII	CCGG	2 cut(s)	195, 234
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	8 cut(s)	16, 434, 511, 811, 923, 935, 1022, 1163
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HinfI	GANTC	4 cut(s)	427, 657, 773, 1112
HpaII	CCGG	2 cut(s)	195, 234
Hpy166II	GTNNAC	4 cut(s)	305, 379, 495, 1187
Hpy188I	TCNGA	2 cut(s)	871, 915
Hpy188III	TCNNGA	9 cut(s)	86, 109, 132, 320, 586, 788, 877, 946, 1036
Hpy8I	GTNNAC	4 cut(s)	305, 379, 495, 1187
Hpy99I	CGWCG	2 cut(s)	56, 65
HpyAV	CCTTC	4 cut(s)	526, 851, 876, 1016
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4V	TGCA	5 cut(s)	12, 487, 962, 977, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 542
HpyF3I	CTNAG	3 cut(s)	30, 80, 286
Hsp92II	CATG	8 cut(s)	16, 434, 511, 811, 923, 935, 1022, 1163
HspAI	GCGC	1 cut(s)	610
KflI	GGGWCCC	1 cut(s)	160
Ksp22I	TGATCA	2 cut(s)	70, 910
LmnI	GCTCC	2 cut(s)	215, 793
Lsp1109I	GCAGC	1 cut(s)	961
LweI	GCATC	2 cut(s)	79, 756
MaeI	CTAG	6 cut(s)	366, 395, 444, 797, 836, 845
MaeIII	GTNAC	1 cut(s)	320
MboII	GAAGA	5 cut(s)	157, 543, 614, 745, 947
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	4 cut(s)	136, 147, 331, 994
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	5 cut(s)	168, 383, 478, 1028, 1179
MlyI	GAGTC	2 cut(s)	436, 1106
MmeI	TCCRAC	1 cut(s)	1129
MseI	TTAA	3 cut(s)	171, 644, 999
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	2 cut(s)	195, 234
MspR9I	CCNGG	3 cut(s)	165, 220, 638
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	1170
MvaI	CCWGG	3 cut(s)	165, 220, 638
MvnI	CGCG	2 cut(s)	133, 610
MwoI	GCNNNNNNNGC	2 cut(s)	191, 542
NlaIII	CATG	8 cut(s)	16, 434, 511, 811, 923, 935, 1022, 1163
NlaIV	GGNNCC	4 cut(s)	107, 161, 162, 733
NmuCI	GTSAC	1 cut(s)	320
NruI	TCGCGA	1 cut(s)	133
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	1170
PfeI	GAWTC	2 cut(s)	657, 773
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	59, 976
PleI	GAGTC	2 cut(s)	435, 1106
PpsI	GAGTC	2 cut(s)	435, 1106
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	163, 218, 636
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	3 cut(s)	163, 218, 636
PspN4I	GGNNCC	4 cut(s)	107, 161, 162, 733
PspPI	GGNCC	6 cut(s)	106, 160, 282, 504, 625, 732
PspPPI	RGGWCCY	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	949, 981
PsuI	RGATCY	4 cut(s)	136, 147, 331, 994
PvuII	CAGCTG	1 cut(s)	1010
RruI	TCGCGA	1 cut(s)	133
RsaI	GTAC	2 cut(s)	128, 378
RsaNI	GTAC	2 cut(s)	127, 377
SaqAI	TTAA	3 cut(s)	171, 644, 999
SatI	GCNGC	2 cut(s)	58, 975
Sau96I	GGNCC	6 cut(s)	106, 160, 282, 504, 625, 732
SchI	GAGTC	2 cut(s)	436, 1106
ScrFI	CCNGG	3 cut(s)	165, 220, 638
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	79, 756
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	5 cut(s)	106, 160, 504, 625, 732
SmlI	CTYRAG	3 cut(s)	586, 757, 788
SmoI	CTYRAG	3 cut(s)	586, 757, 788
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	5 cut(s)	168, 383, 478, 1028, 1179
SsiI	CCGC	5 cut(s)	57, 213, 451, 718, 770
SspMI	CTAG	6 cut(s)	366, 395, 444, 797, 836, 845
StyD4I	CCNGG	3 cut(s)	163, 218, 636
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	1 cut(s)	714
TaqI	TCGA	3 cut(s)	51, 265, 292
TasI	AATT	5 cut(s)	168, 383, 478, 1028, 1179
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	657, 773
Tru1I	TTAA	3 cut(s)	171, 644, 999
Tru9I	TTAA	3 cut(s)	171, 644, 999
TscAI	CASTG	2 cut(s)	748, 831
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	974
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	6 cut(s)	543, 555, 658, 948, 1035, 1113
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	748, 831
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	5 cut(s)	106, 160, 504, 625, 732
XapI	RAATTY	2 cut(s)	1028, 1179
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	6 cut(s)	366, 395, 444, 797, 836, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.