RLG00000008396

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014842
Physical Location & Seq
Forward (+)
30010780 .. 30011210
431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008396

Sequence Viewer

Length: 342 bp
ATGGTCCGGCTTCCATGGAGGTCTTTGCCGCCTCCACATCCTCGATTGCTCCAGGCTATTGATCGGCCCTTTCCTCTTTTCATGGAAGGGTGGATTGCATGTTGTTTGGATTGGCTCAGCTTCGGGCGGGGATGGTTTCTTGGTTGGAGGAGGAGACCCGAGATCGGGTTTGAGCAGCGTCTCCCTTCTTATAGGGATTGGAAGATTTTCAATGGAGATCGACGGCGGCGATGGGATTGGTCAAACACTGAGTTTGGATGCCATGTTCTTGGGGGTCCAGATCAGTGTGATGGGGTACTTACGAGATCTATGGAAGATCTGGGTTTGGGATTTAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.51

Weight (kDa)

9.29

Isoelectric Point (pI)

84.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 127, 226
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 164, 165
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 148, 185
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 4, 66, 275
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 4, 275
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 126, 225, 284
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 148, 185
BglII AGATCT 2 cut(s) 305, 316
BisI GCNGC 3 cut(s) 29, 176, 227
BlpI GCTNAGC 1 cut(s) 116
BlsI GCNGC 3 cut(s) 30, 177, 228
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 2 cut(s) 4, 275
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 4, 66, 275
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 165
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 3 cut(s) 37, 137, 263
BseLI CCNNNNNNNGG 2 cut(s) 164, 165
BseMII CTCAG 2 cut(s) 130, 240
BseRI GAGGAG 2 cut(s) 163, 166
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 164, 165
BsmAI GTCTC 2 cut(s) 148, 185
BsmBI CGTCTC 1 cut(s) 185
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 6 cut(s) 61, 162, 217, 280, 305, 316
Bsp1720I GCTNAGC 1 cut(s) 116
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 3 cut(s) 29, 127, 226
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 129, 241
BspLI GGNNCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 6 cut(s) 61, 162, 217, 280, 305, 316
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 116, 249
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 37, 137, 263
BstKTI GATC 6 cut(s) 64, 165, 220, 283, 308, 319
BstMAI GTCTC 2 cut(s) 148, 185
BstMBI GATC 6 cut(s) 61, 162, 217, 280, 305, 316
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 305, 316
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 2 cut(s) 305, 316
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 37, 137, 263
BtsIMutI CAGTG 2 cut(s) 246, 290
Cfr13I GGNCC 3 cut(s) 4, 66, 275
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 296
CviAII CATG 4 cut(s) 15, 82, 99, 263
CviJI RGCY 5 cut(s) 10, 56, 67, 115, 120
CviKI_1 RGCY 5 cut(s) 10, 56, 67, 115, 120
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 116, 249
DpnI GATC 6 cut(s) 63, 164, 219, 282, 307, 318
DpnII GATC 6 cut(s) 61, 162, 217, 280, 305, 316
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 4, 275
Eco88I CYCGRG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 4 cut(s) 18, 85, 102, 266
FaiI YATR 6 cut(s) 16, 83, 100, 192, 264, 311
FatI CATG 4 cut(s) 14, 81, 98, 262
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 29, 176, 227
FokI GGATG 3 cut(s) 24, 144, 270
Fsp4HI GCNGC 3 cut(s) 29, 176, 227
GluI GCNGC 3 cut(s) 29, 176, 227
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 7
HgaI GACGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 18, 85, 102, 266
HpaII CCGG 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 80, 195
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 116, 249
Hsp92II CATG 4 cut(s) 18, 85, 102, 266
Kzo9I GATC 6 cut(s) 61, 162, 217, 280, 305, 316
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 20, 38, 65, 291, 305
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 248
MalI GATC 6 cut(s) 63, 164, 219, 282, 307, 318
MboI GATC 6 cut(s) 61, 162, 217, 280, 305, 316
MboII GAAGA 2 cut(s) 214, 326
MflI RGATCY 2 cut(s) 305, 316
MluCI AATT 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 6 cut(s) 12, 42, 51, 84, 141, 144
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 340
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 14
NdeII GATC 6 cut(s) 61, 162, 217, 280, 305, 316
NlaIII CATG 4 cut(s) 18, 85, 102, 266
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 206
PkrI GCNGC 3 cut(s) 30, 177, 228
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 4, 66, 275
PsuI RGATCY 2 cut(s) 305, 316
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 3 cut(s) 29, 176, 227
Sau3AI GATC 6 cut(s) 61, 162, 217, 280, 305, 316
Sau96I GGNCC 3 cut(s) 4, 66, 275
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 23, 122
SfaNI GCATC 1 cut(s) 248
SinI GGWCC 2 cut(s) 4, 275
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 29, 127, 226
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 14
TaqI TCGA 2 cut(s) 43, 220
TasI AATT 1 cut(s) 337
TauI GCSGC 2 cut(s) 31, 229
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 2 cut(s) 253, 290
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 70
TspRI CASTG 2 cut(s) 253, 290
VpaK11BI GGWCC 2 cut(s) 4, 275
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.