RLG00000019618

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014842
Physical Location & Seq
Reverse (-)
54323338 .. 54324754
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019618

Sequence Viewer

Length: 726 bp
ATGGAGCTTGAGAAGGGGTTGGAGCCAGAACAAGCCAACAATACCCAAGATCCAAATGATTTTGAGGACAAAGGTAAAGCTGCCCCGATTGAAGAAGGCAAAAAAGAGCAGGGAGGTGACAAGCTTCTGCTTCCTCCTTCTCCTACAAAATCTCCCCAGAAGCTAAAGTTCCTGCTGCCAGATTTATTCAAACCGGCTGTTGATCGGCCCTTTCCTTGTTTCAGGGAAGGGTGGATTGCAAGCTCTTTGGATTGGCTCAGCTTCCGGCGGGGATGGTTTCTTGGATGGAGGAAGAGACCCGAGATCCGATTCGAGCGGCGTCTCCTTTCTTATAGGGATTGGAAGATTTTCGATGGAGGTATAGGAATGGCAACAGAGTCTTTGCTGAAGGGAGTCAGAGCCTTGCTTTGGTGGAAGATCATGATGATGTGGTTGTTGTGGGTGCCGATCGACGGCGGCGACGGGATTGGTCAAGCACTGAGTCTAGATGCCTTGTTCTTGGGGGTCCAGATTAGTGGGATGGGCTACTCACGAGATCTATGGAAGATCTATGTTTGGGACCCAGGAATTAAAGATTTGCCTGCTGGTTTTGTCAGATTGTACGTGGTGGTGTTCCTCCATCGGGAGAGTAGTCTCCGGCCATATTCAAGGGCAAGGAGGAGAGGATCGAGCTTTGGTCGTTTGGGCCTTAGTTCGAATGTGGTGTCAACAAACCATATCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.6

Weight (kDa)

9.61

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 316
AciI CCGC 3 cut(s) 268, 316, 456
AclWI GGATC 3 cut(s) 44, 298, 673
AcoI YGGCCR 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 3 cut(s) 408, 452, 622
AgsI TTSAA 3 cut(s) 92, 190, 648
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 7 cut(s) 7, 80, 124, 163, 243, 261, 672
AluI AGCT 7 cut(s) 7, 80, 124, 163, 243, 261, 672
Alw26I GTCTC 3 cut(s) 289, 326, 638
AlwI GGATC 3 cut(s) 44, 298, 673
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 3 cut(s) 206, 638, 685
ApeKI GCWGC 2 cut(s) 80, 175
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 4 cut(s) 207, 505, 559, 685
AsuHPI GGTGA 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 695
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 2 cut(s) 505, 559
BanI GGYRCC 1 cut(s) 442
BauI CACGAG 2 cut(s) 531, 721
BbvI GCAGC 2 cut(s) 67, 162
BccI CCATC 5 cut(s) 267, 279, 347, 514, 627
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 3 cut(s) 289, 326, 638
BfaI CTAG 1 cut(s) 485
BglII AGATCT 2 cut(s) 535, 546
BisI GCNGC 4 cut(s) 81, 176, 317, 457
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 4 cut(s) 82, 177, 318, 458
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 2 cut(s) 505, 559
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 4 cut(s) 207, 505, 559, 685
BmiI GGNNCC 5 cut(s) 24, 444, 506, 560, 561
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 478
Bpu1102I GCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 452, 622
Bse118I RCCGGY 1 cut(s) 193
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 3 cut(s) 278, 290, 525
BseLI CCNNNNNNNGG 3 cut(s) 408, 452, 622
BseMII CTCAG 2 cut(s) 271, 470
BseRI GAGGAG 1 cut(s) 673
BseXI GCAGC 2 cut(s) 67, 162
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 3 cut(s) 208, 640, 687
BshNI GGYRCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 194, 265, 637
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 3 cut(s) 408, 452, 622
BsmAI GTCTC 3 cut(s) 289, 326, 638
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 3 cut(s) 208, 640, 687
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 695
Bsp143I GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 3 cut(s) 268, 316, 456
BspANI GGCC 3 cut(s) 208, 640, 687
BspCNI CTCAG 2 cut(s) 270, 471
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 5 cut(s) 24, 444, 506, 560, 561
BspPI GGATC 3 cut(s) 44, 298, 673
BspT104I TTCGAA 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
BssNI GRCGYC 1 cut(s) 319
BssSI CACGAG 2 cut(s) 531, 721
Bst2BI CACGAG 2 cut(s) 531, 721
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 241, 582
BstDEI CTNAG 3 cut(s) 257, 479, 689
BstF5I GGATG 3 cut(s) 278, 290, 525
BstKTI GATC 8 cut(s) 52, 205, 306, 420, 450, 538, 549, 668
BstMAI GTCTC 3 cut(s) 289, 326, 638
BstMBI GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
BstMCI CGRYCG 1 cut(s) 450
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 67, 162
BstX2I RGATCY 4 cut(s) 49, 303, 535, 546
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 4 cut(s) 49, 303, 535, 546
BsuRI GGCC 3 cut(s) 208, 640, 687
BtsCI GGATG 3 cut(s) 278, 290, 525
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 2 cut(s) 241, 582
CciI TCATGA 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 4 cut(s) 207, 505, 559, 685
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 601
CviAII CATG 1 cut(s) 421
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 257, 479, 689
DpnI GATC 8 cut(s) 51, 204, 305, 419, 449, 537, 548, 667
DpnII GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 505, 559
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 1 cut(s) 424
FaiI YATR 7 cut(s) 333, 362, 422, 541, 552, 643, 717
FaqI GGGAC 1 cut(s) 572
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 81, 176, 317, 457
FokI GGATG 3 cut(s) 285, 297, 532
Fsp4HI GCNGC 4 cut(s) 81, 176, 317, 457
FspBI CTAG 1 cut(s) 485
GluI GCNGC 4 cut(s) 81, 176, 317, 457
HaeIII GGCC 3 cut(s) 208, 640, 687
HapII CCGG 3 cut(s) 194, 265, 637
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 4 cut(s) 309, 377, 393, 481
HpaII CCGG 3 cut(s) 194, 265, 637
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 3 cut(s) 308, 398, 596
Hpy188III TCNNGA 6 cut(s) 421, 485, 508, 531, 623, 723
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 2 cut(s) 455, 464
HpyAV CCTTC 5 cut(s) 7, 89, 147, 221, 382
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 257, 479, 689
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 1 cut(s) 424
KflI GGGWCCC 1 cut(s) 559
Kzo9I GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
LmnI GCTCC 2 cut(s) 4, 22
Lsp1109I GCAGC 2 cut(s) 67, 162
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 116
MalI GATC 8 cut(s) 51, 204, 305, 419, 449, 537, 548, 667
MbiI CCGCTC 1 cut(s) 316
MboI GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
MboII GAAGA 5 cut(s) 104, 304, 355, 427, 556
MflI RGATCY 4 cut(s) 49, 303, 535, 546
MluCI AATT 1 cut(s) 567
MlyI GAGTC 3 cut(s) 386, 402, 490
MnlI CCTC 8 cut(s) 58, 107, 144, 282, 350, 626, 651, 656
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 3 cut(s) 194, 265, 637
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
NdeII GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 5 cut(s) 24, 444, 506, 560, 561
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 695
PagI TCATGA 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 4 cut(s) 82, 177, 318, 458
Ple19I CGATCG 1 cut(s) 450
PleI GAGTC 3 cut(s) 385, 401, 489
PpsI GAGTC 3 cut(s) 385, 401, 489
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 5 cut(s) 24, 444, 506, 560, 561
PspPI GGNCC 4 cut(s) 207, 505, 559, 685
PspPPI RGGWCCY 1 cut(s) 559
PsuI RGATCY 4 cut(s) 49, 303, 535, 546
PvuI CGATCG 1 cut(s) 450
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 4 cut(s) 81, 176, 317, 457
Sau3AI GATC 8 cut(s) 49, 202, 303, 417, 447, 535, 546, 665
Sau96I GGNCC 4 cut(s) 207, 505, 559, 685
SchI GAGTC 3 cut(s) 386, 402, 490
ScrFI CCNGG 1 cut(s) 564
SfaNI GCATC 1 cut(s) 478
SfuI TTCGAA 1 cut(s) 695
SinI GGWCC 2 cut(s) 505, 559
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 567
SsiI CCGC 3 cut(s) 268, 316, 456
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 562
TaiI ACGT 1 cut(s) 606
TaqI TCGA 5 cut(s) 312, 351, 450, 668, 695
TasI AATT 1 cut(s) 567
TauI GCSGC 2 cut(s) 319, 459
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 80, 175
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 505, 559
XbaI TCTAGA 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.