Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014842

Physical Location & Seq

Genomic Coordinates Reverse (-)

55557777 .. 55560481

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTGGCGGGGTCGTTGAAGTGCCCAGTGATGGTGGCCAACGATGGTGGTTCGGAGTCAATAACCGCAGAGTCATTGCATAATGGAGCCGGACCCTTGCTTTGGTGGAAGGTCATGATCCTGTGGTTGTTGTGGGTGCAAATCGTCAGCGACGACGGGATTGGTCAAGCATTGAGTCTGGGTGCCTTGTTCTTGGGTGTCCAGATCAGTGTAATGGGTACTTACGAGATTTATGGAGGATCTGGGTTTGGGACCCAGGAATTCATGATCTACCCGTTTGTCTTGCCGGAATTTGGTGGTGTTCCGCCACCGGGAAACGTTGCCAGTCTCATACTTGTAATGTCCCCAGTTTTTGTTCCTGACCCGGATTTGGGTTGCGAAGCTCATGTCGAACGAAGGTGTTGCAGGGACAACATTGAGAGTTTGGCTGTAGATGTGGCCCAATTGGATCTTGATTTTCATGATGGTGTGACTATCGGGCAAGTTGTTATTTCGAAGAGCAAGGCTGGAATGCGTTCTACCAAGGAGATCAACGTCGAGGTGATTTTGAATAGCCATTCATTGCGAAACAGTTCTACTATTGGAATTGAATTGAACAGTGGGGTGTTAACGCTAACCAGCCAAGTTCGATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

213

Amino Acids

22.7

Weight (kDa)

4.77

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014842)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355631 RchiOBHm_Chr6g0275341
rosa_laevigata	RLG00000000647 RLG00000004040 RLG00000008396 RLG00000009225 RLG00000013232 RLG00000017309 RLG00000018491 RLG00000019618 RLG00000032526 RLG00000033789 RLG00000035841 RLG00000036823
rosa_multiflora	Rmu_sc0000706.1_g000011
rosa_roxburghii	Rroxscaffold_1G00021970
rosa_samantha	Rh7DG140300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	3 cut(s)	8, 66, 305
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	3 cut(s)	112, 247, 456
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	260, 290
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	6 cut(s)	31, 102, 293, 311, 370, 371
AgsI	TTSAA	4 cut(s)	19, 550, 590, 595
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	112, 247, 456
AoxI	GGCC	2 cut(s)	36, 438
ApoI	RAATTY	2 cut(s)	260, 290
ArsI	GACNNNNNNTTYG	4 cut(s)	84, 116, 372, 404
Asp700I	GAANNNNTTC	2 cut(s)	514, 571
AspS9I	GGNCC	3 cut(s)	92, 252, 439
AsuC2I	CCSGG	2 cut(s)	312, 365
AsuHPI	GGTGA	1 cut(s)	553
AsuII	TTCGAA	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	92, 252
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	182
BccI	CCATC	3 cut(s)	25, 38, 458
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	312, 365
BcoDI	GTCTC	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	429
Bme1390I	CCNGG	3 cut(s)	257, 312, 365
Bme18I	GGWCC	2 cut(s)	92, 252
BmgT120I	GGNCC	3 cut(s)	92, 252, 439
BmiI	GGNNCC	5 cut(s)	88, 94, 184, 253, 254
BmrFI	CCNGG	3 cut(s)	257, 312, 365
BmrI	ACTGGG	2 cut(s)	20, 341
BmuI	ACTGGG	2 cut(s)	20, 341
Bpu14I	TTCGAA	1 cut(s)	494
BpuMI	CCSGG	2 cut(s)	312, 365
BsaJI	CCNNGG	2 cut(s)	255, 522
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 102, 293, 311, 370, 371
Bse1I	ACTGG	3 cut(s)	26, 324, 347
Bse3DI	GCAATG	2 cut(s)	74, 560
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	255, 522
BseLI	CCNNNNNNNGG	6 cut(s)	31, 102, 293, 311, 370, 371
BseMI	GCAATG	2 cut(s)	74, 560
BseNI	ACTGG	3 cut(s)	26, 324, 347
BseSI	GKGCMC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	38, 440
BshNI	GGYRCC	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	90, 287, 311, 365
BslFI	GGGAC	3 cut(s)	265, 328, 422
BslI	CCNNNNNNNGG	6 cut(s)	31, 102, 293, 311, 370, 371
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	3 cut(s)	265, 328, 422
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	38, 440
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
BspACI	CCGC	3 cut(s)	8, 66, 305
BspANI	GGCC	2 cut(s)	38, 440
BspHI	TCATGA	3 cut(s)	114, 264, 460
BspLI	GGNNCC	5 cut(s)	88, 94, 184, 253, 254
BspPI	GGATC	3 cut(s)	112, 247, 456
BspQI	GCTCTTC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	74, 560
BsrI	ACTGG	3 cut(s)	26, 324, 347
BssECI	CCNNGG	2 cut(s)	255, 522
BssMI	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	572, 599
Bst6I	CTCTTC	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	6 cut(s)	120, 207, 242, 270, 451, 531
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	255, 310, 363
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	239, 448
BstYI	RGATCY	2 cut(s)	239, 448
BsuRI	GGCC	2 cut(s)	38, 440
BtsIMutI	CAGTG	3 cut(s)	33, 214, 604
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	3 cut(s)	114, 264, 460
Cfr13I	GGNCC	3 cut(s)	92, 252, 439
Csp6I	GTAC	1 cut(s)	219
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	4 cut(s)	115, 265, 386, 461
CviJI	RGCY	8 cut(s)	38, 89, 383, 428, 440, 506, 555, 621
CviKI_1	RGCY	8 cut(s)	38, 89, 383, 428, 440, 506, 555, 621
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	6 cut(s)	119, 206, 241, 269, 450, 530
DpnII	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	92, 252
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	118, 268, 389, 464
FaiI	YATR	7 cut(s)	81, 116, 234, 266, 332, 387, 462
FaqI	GGGAC	3 cut(s)	265, 328, 422
FatI	CATG	4 cut(s)	114, 264, 385, 460
HaeIII	GGCC	2 cut(s)	38, 440
HapII	CCGG	4 cut(s)	90, 287, 311, 365
Hin1II	CATG	4 cut(s)	118, 268, 389, 464
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	3 cut(s)	56, 71, 175
HpaI	GTTAAC	1 cut(s)	609
HpaII	CCGG	4 cut(s)	90, 287, 311, 365
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	6 cut(s)	115, 202, 265, 359, 452, 461
Hpy8I	GTNNAC	1 cut(s)	609
Hpy99I	CGWCG	3 cut(s)	155, 158, 539
HpyAV	CCTTC	2 cut(s)	103, 390
HpyCH4III	ACNGT	2 cut(s)	572, 599
HpyCH4IV	ACGT	2 cut(s)	318, 534
HpyCH4V	TGCA	3 cut(s)	79, 139, 405
HpySE526I	ACGT	2 cut(s)	318, 534
Hsp92II	CATG	4 cut(s)	118, 268, 389, 464
KflI	GGGWCCC	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	609
Kzo9I	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	1 cut(s)	86
MaeII	ACGT	2 cut(s)	318, 534
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	6 cut(s)	119, 206, 241, 269, 450, 530
MboI	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
MboII	GAAGA	1 cut(s)	508
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	2 cut(s)	239, 448
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	5 cut(s)	260, 290, 443, 585, 590
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	65, 80, 184
MnlI	CCTC	2 cut(s)	230, 532
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	2 cut(s)	514, 571
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	465
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	4 cut(s)	90, 287, 311, 365
MspR9I	CCNGG	3 cut(s)	257, 312, 365
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	257
NciI	CCSGG	2 cut(s)	312, 365
NdeII	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
NlaIII	CATG	4 cut(s)	118, 268, 389, 464
NlaIV	GGNNCC	5 cut(s)	88, 94, 184, 253, 254
NmuCI	GTSAC	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	494
PagI	TCATGA	3 cut(s)	114, 264, 460
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	514, 571
PleI	GAGTC	3 cut(s)	64, 79, 183
PpsI	GAGTC	3 cut(s)	64, 79, 183
PpuMI	RGGWCCY	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	5 cut(s)	88, 94, 184, 253, 254
PspPI	GGNCC	3 cut(s)	92, 252, 439
PspPPI	RGGWCCY	1 cut(s)	252
PsuI	RGATCY	2 cut(s)	239, 448
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	608
Sau3AI	GATC	6 cut(s)	117, 204, 239, 267, 448, 528
Sau96I	GGNCC	3 cut(s)	92, 252, 439
SchI	GAGTC	3 cut(s)	65, 80, 184
ScrFI	CCNGG	3 cut(s)	257, 312, 365
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	6 cut(s)	114, 321, 385, 401, 537, 543
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	494
SinI	GGWCC	2 cut(s)	92, 252
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	5 cut(s)	260, 290, 443, 585, 590
SsiI	CCGC	3 cut(s)	8, 66, 305
StyD4I	CCNGG	3 cut(s)	255, 310, 363
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	572, 599
TaiI	ACGT	2 cut(s)	321, 537
TaqI	TCGA	4 cut(s)	390, 494, 537, 628
TasI	AATT	5 cut(s)	260, 290, 443, 585, 590
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	3 cut(s)	33, 214, 604
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	253, 449, 549
TspRI	CASTG	3 cut(s)	33, 214, 604
VpaK11BI	GGWCC	2 cut(s)	92, 252
XapI	RAATTY	2 cut(s)	260, 290
XmnI	GAANNNNTTC	2 cut(s)	514, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.