Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

67541473 .. 67541838

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGGTCTTAAAGTTATATGCATGGGGAACGCATTTCAAGAAGGCAATAGAAAAGTTAACGAAGGAGGAGCACAAATGGATATCTTCAATGCTGTTAAGGAGAGCATATAGTACTTTTCTCGTTTGGTCAACTCCTGTTTTTGTCTCTACTGCAACATTTGGAGCATGCTATTTTCTCAAAATTCCGTTACATGCAAATAATGTATTCACTTTCATCTCAACTTTGCGGCTTGTTCATGGCCCCATTCGATCCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGCCCATATTGTGAAATTCCTTGAGGCACCTGAGCTGAAACTTCAAATGTCCGGAACTGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

10.01

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	2 cut(s)	229, 272
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	183, 314
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	40, 90, 284, 344
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	183, 314
AspS9I	GGNCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	244, 327
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	229, 272
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	244, 327
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	171, 197
BsuRI	GGCC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	5 cut(s)	24, 168, 194, 239, 363
CviJI	RGCY	4 cut(s)	232, 243, 287, 334
CviKI_1	RGCY	4 cut(s)	232, 243, 287, 334
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	5 cut(s)	27, 171, 197, 242, 366
FatI	CATG	5 cut(s)	23, 167, 193, 238, 362
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	5 cut(s)	27, 171, 197, 242, 366
HincII	GTYRAC	2 cut(s)	60, 132
HindII	GTYRAC	2 cut(s)	60, 132
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	60, 132
Hpy188III	TCNNGA	2 cut(s)	40, 351
Hpy8I	GTNNAC	2 cut(s)	60, 132
HpyAV	CCTTC	2 cut(s)	37, 58
HpyCH4V	TGCA	5 cut(s)	23, 155, 197, 296, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	27, 171, 197, 242, 366
Kpn2I	TCCGGA	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	70, 164
LpnPI	CCDG	3 cut(s)	150, 273, 342
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	183, 314
MnlI	CCTC	2 cut(s)	61, 316
Mph1103I	ATGCAT	1 cut(s)	25
MroI	TCCGGA	1 cut(s)	350
MseI	TTAA	3 cut(s)	11, 59, 98
MspI	CCGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	5 cut(s)	27, 171, 197, 242, 366
NlaIV	GGNNCC	2 cut(s)	244, 327
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	171, 197
PaeI	GCATGC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	244, 327
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	11, 59, 98
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	5 cut(s)	9, 262, 294, 331, 336
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	2 cut(s)	183, 314
SsiI	CCGC	2 cut(s)	229, 272
StyI	CCWWGG	1 cut(s)	288
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	183, 314
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	11, 59, 98
Tru9I	TTAA	3 cut(s)	11, 59, 98
TspDTI	ATGAA	3 cut(s)	17, 205, 227
TspGWI	ACGGA	1 cut(s)	177
XapI	RAATTY	2 cut(s)	183, 314
XceI	RCATGY	2 cut(s)	171, 197
ZrmI	AGTACT	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.