Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

148256 .. 151421

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgacagcaagcctgattgtttacgcttctggtggcaacccctcctatcctcttgttgtagcagctcatccatctgaacctaaccagattgcagttggcatgactgacgggtcagtgcatctggttgaaccatctgatgcagagctgaagtggggtggcacaccctctcaagataatggtcgtaccaattcatcaaatccgtctcgtagtggtcaagcatcagatagaacttccttccaggttctgtcagagtatcctgatgcagaaaagactattgagcagcaaaatactactttaggagaaaccaacctagaactggccggtgaagaggacaacgagcatcttggaggcgcagttcgtgatggcgaagacgtcaaggtgccggatcttgtcagcgacggctactccattgcccagaatataacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

142

Amino Acids

14.96

Weight (kDa)

4.2

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AatII	GACGTC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
AluBI	AGCT	2 cut(s)	65, 145
AluI	AGCT	2 cut(s)	65, 145
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	393
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	62, 280
AspLEI	GCGC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	74, 292
BccI	CCATC	3 cut(s)	79, 139, 356
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	63, 281
BlsI	GCNGC	2 cut(s)	64, 282
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	5 cut(s)	127, 127, 227, 250, 349
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	372
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 389, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	74, 292
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	321, 383
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	320
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	74, 292
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	12, 65, 145, 320, 402
CviKI_1	RGCY	5 cut(s)	12, 65, 145, 320, 402
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 422
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	63, 281
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	63, 281
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	63, 281
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	2 cut(s)	321, 383
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HpaII	CCGG	2 cut(s)	321, 383
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	76, 136, 223, 250
Hpy188III	TCNNGA	3 cut(s)	170, 257, 359
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	92, 118, 140, 263
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	74, 292
LweI	GCATC	5 cut(s)	127, 127, 227, 250, 349
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	338, 380
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	5 cut(s)	52, 60, 175, 322, 341
MspI	CCGG	2 cut(s)	321, 383
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	64, 282
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	63, 281
Sau3AI	GATC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	8 cut(s)	67, 82, 147, 243, 312, 375, 381, 428
SfaNI	GCATC	5 cut(s)	127, 127, 227, 250, 349
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	375
TasI	AATT	1 cut(s)	187
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	62, 280
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 313
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.