Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

54097183 .. 54106080

Gene Structure 8898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTATGACAGCAAGCCTGATTGTTTACGCTTTCTTAAGATTCAAATGTCGTATGGCGCCTTCTACTTATATACCATCATTTTCTCTCAGTGTAGATTCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACCAAAGGTGATTGCATCCACTGGGAGATTTTGGCATGATTGGGACAAATCAAAGAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCTACCTAGAACTGGCCGGTGAAGAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTCTCTCAATGGATCCGTGTCCGCATTCAGTGTTGCAAAAGACAGATGAATTAGAAAAAGTAAGTGAAGAACCTGAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGTAGGAGCGGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGTGAGTCCAATGGAATTAGTAAAGAGGTCAGACCTGGTAAAAAGGTGGCTATATGTGGAGAATTTGGCTCAGGCAAGTCAAGCCTTCTAGCTGCAATTCTTGCAGAAATTCCAAATGTGCAAGGAAATGAATATGAAATAGAAGCACTTTTAGGCAAGACGCTATTACTTGTGACCCATCAAGTTGATTTCCCGCCTGCATTTGATTCTGATTTGGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATGCCTATTGCAATCTAGGAGTGTTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTCCATACCAAATACCAATGGTCTGTGTCGCAATTCAGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

336

Amino Acids

37.14

Weight (kDa)

4.78

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	524
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	428, 524, 815
AclWI	GGATC	3 cut(s)	310, 413, 426
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	683, 729
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	301, 518, 620
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	44, 100, 550
AjnI	CCWGG	2 cut(s)	655, 947
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	6 cut(s)	217, 358, 368, 713, 902, 1004
AluI	AGCT	6 cut(s)	217, 358, 368, 713, 902, 1004
Alw26I	GTCTC	1 cut(s)	970
AlwI	GGATC	3 cut(s)	310, 413, 426
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	303, 601
ApeKI	GCWGC	3 cut(s)	265, 333, 713
ApoI	RAATTY	2 cut(s)	683, 729
AspLEI	GCGC	3 cut(s)	59, 331, 333
AsuHPI	GGTGA	6 cut(s)	140, 163, 320, 403, 584, 635
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	56
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
BauI	CACGAG	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	277, 345, 700
BccI	CCATC	4 cut(s)	83, 119, 563, 807
BciT130I	CCWGG	2 cut(s)	657, 949
BciVI	GTATCC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	970
BfaI	CTAG	7 cut(s)	296, 365, 371, 591, 710, 926, 1005
BfoI	RGCGCY	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	249
BglII	AGATCT	2 cut(s)	587, 862
BisI	GCNGC	4 cut(s)	266, 334, 525, 714
BlsI	GCNGC	4 cut(s)	267, 335, 526, 715
Bme1390I	CCNGG	2 cut(s)	657, 949
BmiI	GGNNCC	3 cut(s)	58, 420, 510
BmrFI	CCNGG	2 cut(s)	657, 949
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	5 cut(s)	167, 235, 316, 345, 864
BmuI	ACTGGG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 518, 620
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	169, 306
BseBI	CCWGG	2 cut(s)	657, 949
BseGI	GGATG	2 cut(s)	158, 331
BseLI	CCNNNNNNNGG	3 cut(s)	301, 518, 620
BseMII	CTCAG	3 cut(s)	101, 705, 842
BseNI	ACTGG	2 cut(s)	169, 306
BsePI	GCGCGC	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	277, 345, 700
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	305, 603
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	301, 518, 620
BsmAI	GTCTC	1 cut(s)	970
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	2 cut(s)	430, 916
BsnI	GGCC	2 cut(s)	305, 603
Bsp143I	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
BspACI	CCGC	3 cut(s)	428, 524, 815
BspANI	GGCC	2 cut(s)	305, 603
BspCNI	CTCAG	3 cut(s)	100, 704, 843
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	58, 420, 510
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	3 cut(s)	310, 413, 426
BspT107I	GGYRCC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	169, 306
BssAI	RCCGGY	1 cut(s)	305
BssHII	GCGCGC	1 cut(s)	329
BssMI	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	657, 949
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	5 cut(s)	14, 203, 331, 360, 819
BstDEI	CTNAG	3 cut(s)	87, 691, 851
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	158, 331
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 331, 333
BstKTI	GATC	6 cut(s)	318, 421, 582, 590, 850, 865
BstMAI	GTCTC	1 cut(s)	970
BstMBI	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	702, 722, 899
BstNI	CCWGG	2 cut(s)	657, 949
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	655, 947
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	277, 345, 700
BstX2I	RGATCY	4 cut(s)	315, 418, 587, 862
BstYI	RGATCY	4 cut(s)	315, 418, 587, 862
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	305, 603
BtsCI	GGATG	2 cut(s)	158, 331
BtsIMutI	CAGTG	3 cut(s)	95, 162, 441
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	14, 203, 331, 360, 819
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	59, 331, 333
Cfr10I	RCCGGY	1 cut(s)	305
CseI	GACGC	2 cut(s)	503, 790
CsiI	ACCWGGT	1 cut(s)	655
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	3 cut(s)	179, 202, 907
DdeI	CTNAG	3 cut(s)	87, 691, 851
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	6 cut(s)	317, 420, 581, 589, 849, 864
DpnII	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	2 cut(s)	655, 947
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	3 cut(s)	182, 205, 910
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	178, 201, 906
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	4 cut(s)	266, 334, 525, 714
FokI	GGATG	2 cut(s)	145, 338
Fsp4HI	GCNGC	4 cut(s)	266, 334, 525, 714
FspBI	CTAG	7 cut(s)	296, 365, 371, 591, 710, 926, 1005
GlaI	GCGC	3 cut(s)	58, 330, 332
GluI	GCNGC	4 cut(s)	266, 334, 525, 714
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	305, 603
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	2 cut(s)	503, 790
HhaI	GCGC	3 cut(s)	59, 331, 333
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	182, 205, 910
Hin6I	GCGC	3 cut(s)	57, 329, 331
HinP1I	GCGC	3 cut(s)	57, 329, 331
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	7 cut(s)	40, 96, 104, 346, 406, 626, 827
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	6 cut(s)	140, 163, 320, 403, 584, 635
Hpy166II	GTNNAC	2 cut(s)	26, 936
Hpy188I	TCNGA	7 cut(s)	235, 493, 587, 653, 832, 847, 852
Hpy188III	TCNNGA	3 cut(s)	242, 371, 866
Hpy8I	GTNNAC	2 cut(s)	26, 936
HpyAV	CCTTC	2 cut(s)	70, 716
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4V	TGCA	8 cut(s)	158, 248, 442, 716, 725, 742, 821, 921
HpyF10VI	GCNNNNNNNGC	3 cut(s)	702, 722, 899
HpyF3I	CTNAG	3 cut(s)	87, 691, 851
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	182, 205, 910
HspAI	GCGC	3 cut(s)	57, 329, 331
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	3 cut(s)	277, 345, 700
LweI	GCATC	5 cut(s)	167, 235, 316, 345, 864
MabI	ACCWGGT	1 cut(s)	655
MaeI	CTAG	7 cut(s)	296, 365, 371, 591, 710, 926, 1005
MaeIII	GTNAC	4 cut(s)	391, 593, 793, 943
MalI	GATC	6 cut(s)	317, 420, 581, 589, 849, 864
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
MboII	GAAGA	3 cut(s)	323, 485, 578
MflI	RGATCY	4 cut(s)	315, 418, 587, 862
MluCI	AATT	6 cut(s)	455, 636, 683, 717, 729, 997
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	3 cut(s)	113, 400, 635
MnlI	CCTC	3 cut(s)	131, 624, 640
MseI	TTAA	2 cut(s)	36, 618
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	657, 949
Mva1269I	GAATGC	2 cut(s)	430, 916
MvaI	CCWGG	2 cut(s)	657, 949
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	702, 722, 899
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
NlaIII	CATG	3 cut(s)	182, 205, 910
NlaIV	GGNNCC	3 cut(s)	58, 420, 510
NmuCI	GTSAC	3 cut(s)	391, 593, 793
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PauI	GCGCGC	1 cut(s)	329
PctI	GAATGC	2 cut(s)	430, 916
PfeI	GAWTC	4 cut(s)	40, 96, 346, 827
PkrI	GCNGC	4 cut(s)	267, 335, 526, 715
PleI	GAGTC	3 cut(s)	112, 400, 634
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	3 cut(s)	112, 400, 634
Psp6I	CCWGG	2 cut(s)	655, 947
PspGI	CCWGG	2 cut(s)	655, 947
PspN4I	GGNNCC	3 cut(s)	58, 420, 510
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	4 cut(s)	315, 418, 587, 862
PteI	GCGCGC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	36, 618
SatI	GCNGC	4 cut(s)	266, 334, 525, 714
Sau3AI	GATC	6 cut(s)	315, 418, 579, 587, 847, 862
SchI	GAGTC	3 cut(s)	113, 400, 635
ScrFI	CCNGG	2 cut(s)	657, 949
SexAI	ACCWGGT	1 cut(s)	655
SfaNI	GCATC	5 cut(s)	167, 235, 316, 345, 864
SfoI	GGCGCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	6 cut(s)	455, 636, 683, 717, 729, 997
SsiI	CCGC	3 cut(s)	428, 524, 815
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	7 cut(s)	296, 365, 371, 591, 710, 926, 1005
StyD4I	CCNGG	2 cut(s)	655, 947
TaaI	ACNGT	1 cut(s)	940
TasI	AATT	6 cut(s)	455, 636, 683, 717, 729, 997
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	4 cut(s)	40, 96, 346, 827
Tru1I	TTAA	2 cut(s)	36, 618
Tru9I	TTAA	2 cut(s)	36, 618
TscAI	CASTG	3 cut(s)	95, 169, 441
TseFI	GTSAC	3 cut(s)	391, 593, 793
TseI	GCWGC	3 cut(s)	265, 333, 713
Tsp45I	GTSAC	3 cut(s)	391, 593, 793
TspDTI	ATGAA	6 cut(s)	468, 579, 765, 771, 831, 923
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	3 cut(s)	95, 169, 441
Vha464I	CTTAAG	1 cut(s)	35
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	2 cut(s)	683, 729
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	7 cut(s)	296, 365, 371, 591, 710, 926, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.