Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

36652353 .. 36653730

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTTCCACTATTATTTCTTACTGAAAAGCCTGTGATCCTATTATCCACGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGGGGGATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGTGAGTCCAATGGAATTAGTAAAGGTAGGGAGAAAACTCAGGAGAATGAAGATATACCGAAGTTGCGAGATGAAGATCGAGCAGAAAGTTGTCATGGGAAATTCTTGGAGCAACTGAGGAAGCAGAAACAAATTAAGCCATCTTCCCAGTCATCAGTGTTAAAGACTATAATCCTATTCCACTGGAAGGAGATTTCACTATCTGGTTTGTTTGCTTTGCTGAAGATACTTACTACAAGTGCTGGTCCTTTGCTTCTCAATGCTTTCATTAGGGTTGCAAAGGGAAATGAAAGTTCCGAGCACGAAGGCACTGGTACTTCAGGTGCAGGCTTATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

169

Amino Acids

18.59

Weight (kDa)

6.85

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	410, 471
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	167, 355
AluBI	AGCT	2 cut(s)	79, 89
AluI	AGCT	2 cut(s)	79, 89
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	131, 182
AvaII	GGWCC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	110, 316
BfaI	CTAG	3 cut(s)	86, 92, 138
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 355
Bse1I	ACTGG	3 cut(s)	316, 356, 484
Bse8I	GATNNNNATC	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	167, 355
BseMII	CTCAG	2 cut(s)	221, 275
BseNI	ACTGG	3 cut(s)	316, 356, 484
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	167, 355
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	36, 126, 134, 244
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	220, 276
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	316, 356, 484
BssMI	GATC	4 cut(s)	36, 126, 134, 244
BstC8I	GCNNGC	2 cut(s)	81, 496
BstDEI	CTNAG	2 cut(s)	207, 284
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	39, 129, 137, 247
BstMBI	GATC	4 cut(s)	36, 126, 134, 244
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	330, 349, 477
Cac8I	GCNNGC	2 cut(s)	81, 496
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	6 cut(s)	31, 79, 89, 150, 307, 498
CviKI_1	RGCY	6 cut(s)	31, 79, 89, 150, 307, 498
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	207, 284
DpnI	GATC	4 cut(s)	38, 128, 136, 246
DpnII	GATC	4 cut(s)	36, 126, 134, 244
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	410, 471
FaeI	CATG	1 cut(s)	266
FaiI	YATR	5 cut(s)	111, 156, 224, 264, 338
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	3 cut(s)	86, 92, 138
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	67, 173
HphI	GGTGA	2 cut(s)	131, 182
Hpy188I	TCNGA	2 cut(s)	134, 466
Hpy188III	TCNNGA	2 cut(s)	92, 209
HpyAV	CCTTC	2 cut(s)	349, 467
HpyCH4V	TGCA	2 cut(s)	446, 494
HpyF3I	CTNAG	2 cut(s)	207, 284
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	36, 126, 134, 244
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	45, 194, 329, 337, 357, 396, 465, 474, 480
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	3 cut(s)	86, 92, 138
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	38, 128, 136, 246
MboI	GATC	4 cut(s)	36, 126, 134, 244
MboII	GAAGA	5 cut(s)	125, 230, 254, 303, 403
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	183, 269, 300
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	171, 279
MseI	TTAA	3 cut(s)	165, 303, 329
MvnI	CGCG	1 cut(s)	52
NdeII	GATC	4 cut(s)	36, 126, 134, 244
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	165, 303, 329
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	4 cut(s)	36, 126, 134, 244
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	4 cut(s)	81, 91, 196, 493
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	3 cut(s)	183, 269, 300
SspMI	CTAG	3 cut(s)	86, 92, 138
TaqI	TCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	183, 269, 300
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	3 cut(s)	165, 303, 329
Tru9I	TTAA	3 cut(s)	165, 303, 329
TscAI	CASTG	3 cut(s)	330, 356, 484
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	126, 231, 255, 424, 471
TspRI	CASTG	3 cut(s)	330, 356, 484
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	91
XspI	CTAG	3 cut(s)	86, 92, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.