WD domain, G-beta repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771 |
| rosa_laevigata | RLG00000026140 |
| rosa_multiflora | Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710 |
| rosa_rugosa | Rorug01G0437600 |
| rosa_samantha | Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 184 |
| AciI | CCGC | 1 cut(s) | 91 |
| AcsI | RAATTY | 2 cut(s) | 56, 271 |
| AcuI | CTGAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 4 cut(s) | 7, 103, 203, 313 |
| AluBI | AGCT | 3 cut(s) | 88, 140, 220 |
| AluI | AGCT | 3 cut(s) | 88, 140, 220 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| ApeKI | GCWGC | 2 cut(s) | 88, 137 |
| ApoI | RAATTY | 2 cut(s) | 56, 271 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 2 cut(s) | 42, 254 |
| AvaII | GGWCC | 2 cut(s) | 42, 254 |
| BbvI | GCAGC | 2 cut(s) | 75, 149 |
| BccI | CCATC | 4 cut(s) | 33, 53, 154, 214 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BfaI | CTAG | 2 cut(s) | 282, 330 |
| BisI | GCNGC | 2 cut(s) | 89, 138 |
| BlsI | GCNGC | 2 cut(s) | 90, 139 |
| Bme18I | GGWCC | 2 cut(s) | 42, 254 |
| BmgT120I | GGNCC | 2 cut(s) | 42, 254 |
| BmsI | GCATC | 1 cut(s) | 302 |
| BpuEI | CTTGAG | 1 cut(s) | 228 |
| BseGI | GGATG | 1 cut(s) | 142 |
| BseXI | GCAGC | 2 cut(s) | 75, 149 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| BsmBI | CGTCTC | 1 cut(s) | 282 |
| BspACI | CCGC | 1 cut(s) | 91 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| BstF5I | GGATG | 1 cut(s) | 142 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstV1I | GCAGC | 2 cut(s) | 75, 149 |
| BtsCI | GGATG | 1 cut(s) | 142 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 2 cut(s) | 42, 254 |
| CviAII | CATG | 2 cut(s) | 175, 194 |
| CviJI | RGCY | 4 cut(s) | 88, 140, 220, 329 |
| CviKI_1 | RGCY | 4 cut(s) | 88, 140, 220, 329 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 184 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 184 |
| Eco47I | GGWCC | 2 cut(s) | 42, 254 |
| Eco57I | CTGAAG | 1 cut(s) | 242 |
| EcoRI | GAATTC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 282 |
| FaeI | CATG | 2 cut(s) | 178, 197 |
| FaiI | YATR | 5 cut(s) | 62, 84, 176, 195, 326 |
| FatI | CATG | 2 cut(s) | 174, 193 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 138 |
| FokI | GGATG | 1 cut(s) | 129 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 138 |
| FspBI | CTAG | 2 cut(s) | 282, 330 |
| GluI | GCNGC | 2 cut(s) | 89, 138 |
| Hin1II | CATG | 2 cut(s) | 178, 197 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 151, 211, 298 |
| Hpy188III | TCNNGA | 1 cut(s) | 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| HpyAV | CCTTC | 2 cut(s) | 267, 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 3 cut(s) | 78, 167, 193 |
| Hsp92II | CATG | 2 cut(s) | 178, 197 |
| LpnPI | CCDG | 2 cut(s) | 113, 173 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 149 |
| LweI | GCATC | 1 cut(s) | 302 |
| MaeI | CTAG | 2 cut(s) | 282, 330 |
| MboII | GAAGA | 1 cut(s) | 106 |
| MluCI | AATT | 3 cut(s) | 56, 262, 271 |
| MnlI | CCTC | 4 cut(s) | 46, 127, 135, 250 |
| MroXI | GAANNNNTTC | 1 cut(s) | 98 |
| MseI | TTAA | 2 cut(s) | 24, 334 |
| NlaIII | CATG | 2 cut(s) | 178, 197 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 2 cut(s) | 90, 139 |
| PspPI | GGNCC | 2 cut(s) | 42, 254 |
| SaqAI | TTAA | 2 cut(s) | 24, 334 |
| SatI | GCNGC | 2 cut(s) | 89, 138 |
| Sau96I | GGNCC | 2 cut(s) | 42, 254 |
| SetI | ASST | 6 cut(s) | 34, 83, 90, 142, 157, 222 |
| SfaNI | GCATC | 1 cut(s) | 302 |
| SinI | GGWCC | 2 cut(s) | 42, 254 |
| SmlI | CTYRAG | 1 cut(s) | 243 |
| SmoI | CTYRAG | 1 cut(s) | 243 |
| Sse9I | AATT | 3 cut(s) | 56, 262, 271 |
| SsiI | CCGC | 1 cut(s) | 91 |
| SspI | AATATT | 1 cut(s) | 73 |
| SspMI | CTAG | 2 cut(s) | 282, 330 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TasI | AATT | 3 cut(s) | 56, 262, 271 |
| Tru1I | TTAA | 2 cut(s) | 24, 334 |
| Tru9I | TTAA | 2 cut(s) | 24, 334 |
| TscAI | CASTG | 1 cut(s) | 195 |
| TseI | GCWGC | 2 cut(s) | 88, 137 |
| TspDTI | ATGAA | 3 cut(s) | 49, 255, 335 |
| TspRI | CASTG | 1 cut(s) | 195 |
| VpaK11BI | GGWCC | 2 cut(s) | 42, 254 |
| XapI | RAATTY | 2 cut(s) | 56, 271 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XmnI | GAANNNNTTC | 1 cut(s) | 98 |
| XspI | CTAG | 2 cut(s) | 282, 330 |