Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

67259200 .. 67265582

Gene Structure 6383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG408600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGCCACAAAACTGAGATCCTCTGTCTTCAACAATTTGATTCGTTATTGGCCCTATCACATCGGATGGTTGAATTTCTGAGCGGTAGAGCTGTTGAGGGGTATAAGTATGAAGATGGTGATGAGATCAGTGACAATGGCCTTTATGCCCCTCTCAATGGTGAGTCCAATGCCATGAAAATAGTGAACCAGGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

66

Amino Acids

7.38

Weight (kDa)

4.56

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	32, 74
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	51, 139
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	131, 173
BbsI	GAAGAC	1 cut(s)	20
BccI	CCATC	2 cut(s)	61, 110
BciT130I	CCWGG	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	6, 71
BshFI	GGCC	2 cut(s)	53, 141
BslI	CCNNNNNNNGG	1 cut(s)	158
BsnI	GGCC	2 cut(s)	53, 141
Bsp143I	GATC	2 cut(s)	18, 126
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	53, 141
BspCNI	CTCAG	2 cut(s)	7, 72
BspPI	GGATC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	84
BssMI	GATC	2 cut(s)	18, 126
Bst2UI	CCWGG	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	15, 80
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	21, 129
BstMBI	GATC	2 cut(s)	18, 126
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	53, 141
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	2 cut(s)	175, 198
CviJI	RGCY	4 cut(s)	6, 53, 92, 141
CviKI_1	RGCY	4 cut(s)	6, 53, 92, 141
DdeI	CTNAG	2 cut(s)	15, 80
DpnI	GATC	2 cut(s)	20, 128
DpnII	GATC	2 cut(s)	18, 126
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	178, 201
FaiI	YATR	5 cut(s)	105, 111, 147, 176, 199
FatI	CATG	2 cut(s)	174, 197
FokI	GGATG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	53, 141
Hin1II	CATG	2 cut(s)	178, 201
HinfI	GANTC	2 cut(s)	41, 164
HphI	GGTGA	2 cut(s)	131, 173
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	66, 81
Hpy8I	GTNNAC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	15, 80
Hsp92II	CATG	2 cut(s)	178, 201
Kzo9I	GATC	2 cut(s)	18, 126
LpnPI	CCDG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	20, 128
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	18, 126
MboII	GAAGA	2 cut(s)	20, 125
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	2 cut(s)	35, 74
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	3 cut(s)	32, 91, 162
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	18, 126
NlaIII	CATG	2 cut(s)	178, 201
NmuCI	GTSAC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	18, 126
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	1 cut(s)	94
SgeI	CNNG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	35, 74
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	189
TasI	AATT	2 cut(s)	35, 74
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	126, 191
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.