Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Forward (+)

1020546 .. 1026807

Gene Structure 6262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGATTTGCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGCAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCGTCTCCTAGTGGTCAAGCATCAGAGAACTTCCTTCCAGAGTGTAGATCCAAGGAGTCCAAGCAGGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAGGTGATTGCATCCACAGATCCACTGGGAGAATTTGGGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCTACCTAGAACTGACCGGTGAAGAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTATCTCAATGGATCTGTGTCCGCATTCATTGTTGCAAAAGACAGATGAATCAGAAAAAGTAAGTGAAGAACCTAAACTTCACTCTGACGCAAGTGGGGTGGAACCTATGATAGGTGACAGGGATGAAGTAATGGTAGAGGTTGAGCAGGCTGATATTGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

231

Amino Acids

24.83

Weight (kDa)

4.27

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccII	CGCG	1 cut(s)	454
AciI	CCGC	2 cut(s)	54, 551
AclWI	GGATC	4 cut(s)	264, 335, 433, 549
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	641
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	152, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	89, 169, 481, 491
AluI	AGCT	4 cut(s)	89, 169, 481, 491
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	4 cut(s)	264, 335, 433, 549
ApeKI	GCWGC	5 cut(s)	51, 83, 86, 388, 456
ApoI	RAATTY	1 cut(s)	353
AsiGI	ACCGGT	1 cut(s)	428
AspLEI	GCGC	3 cut(s)	14, 454, 456
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	5 cut(s)	314, 337, 443, 526, 656
AvaII	GGWCC	1 cut(s)	203
BbvI	GCAGC	5 cut(s)	63, 95, 98, 400, 468
BccI	CCATC	4 cut(s)	38, 103, 163, 293
BciVI	GTATCC	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	4 cut(s)	231, 419, 488, 494
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	5 cut(s)	52, 84, 87, 389, 457
BlsI	GCNGC	5 cut(s)	53, 85, 88, 390, 458
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	6 cut(s)	151, 251, 341, 358, 439, 468
BmuI	ACTGGG	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	4 cut(s)	91, 332, 454, 658
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	56, 90
BseNI	ACTGG	1 cut(s)	351
BsePI	GCGCGC	1 cut(s)	452
BseXI	GCAGC	5 cut(s)	63, 95, 98, 400, 468
Bsh1236I	CGCG	1 cut(s)	454
BshTI	ACCGGT	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	269, 340, 438, 541
BspACI	CCGC	2 cut(s)	54, 551
BspCNI	CTCAG	2 cut(s)	55, 91
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	633
BspPI	GGATC	4 cut(s)	264, 335, 433, 549
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	273
BssHII	GCGCGC	1 cut(s)	452
BssMI	GATC	4 cut(s)	269, 340, 438, 541
BssT1I	CCWWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	454, 483, 678
BstDEI	CTNAG	2 cut(s)	42, 99
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	4 cut(s)	91, 332, 454, 658
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	3 cut(s)	14, 454, 456
BstKTI	GATC	4 cut(s)	272, 343, 441, 544
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	4 cut(s)	269, 340, 438, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 57
BstNSI	RCATGY	1 cut(s)	146
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	5 cut(s)	63, 95, 98, 400, 468
BstX2I	RGATCY	4 cut(s)	269, 340, 438, 541
BstYI	RGATCY	4 cut(s)	269, 340, 438, 541
BsuI	GTATCC	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	91, 332, 454, 658
BtsIMutI	CAGTG	2 cut(s)	144, 344
Cac8I	GCNNGC	3 cut(s)	454, 483, 678
CfoI	GCGC	3 cut(s)	14, 454, 456
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	626
CspAI	ACCGGT	1 cut(s)	428
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	2 cut(s)	124, 143
CviJI	RGCY	7 cut(s)	89, 103, 169, 481, 491, 507, 680
CviKI_1	RGCY	7 cut(s)	89, 103, 169, 481, 491, 507, 680
DdeI	CTNAG	2 cut(s)	42, 99
DpnI	GATC	4 cut(s)	271, 342, 440, 543
DpnII	GATC	4 cut(s)	269, 340, 438, 541
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	127, 146
FaiI	YATR	7 cut(s)	25, 27, 125, 144, 317, 524, 638
FatI	CATG	2 cut(s)	123, 142
Fnu4HI	GCNGC	5 cut(s)	52, 84, 87, 389, 457
FokI	GGATG	4 cut(s)	78, 319, 461, 665
Fsp4HI	GCNGC	5 cut(s)	52, 84, 87, 389, 457
FspBI	CTAG	4 cut(s)	231, 419, 488, 494
GlaI	GCGC	3 cut(s)	13, 453, 455
GluI	GCNGC	5 cut(s)	52, 84, 87, 389, 457
HaeII	RGCGCY	1 cut(s)	15
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	3 cut(s)	14, 454, 456
Hin1II	CATG	2 cut(s)	127, 146
Hin6I	GCGC	3 cut(s)	12, 452, 454
HinP1I	GCGC	3 cut(s)	12, 452, 454
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	278, 469, 578
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	5 cut(s)	314, 337, 443, 526, 656
Hpy188I	TCNGA	6 cut(s)	45, 100, 160, 247, 583, 616
Hpy188III	TCNNGA	4 cut(s)	194, 260, 365, 494
HpyAV	CCTTC	3 cut(s)	25, 216, 266
HpyCH4V	TGCA	8 cut(s)	51, 83, 116, 142, 164, 332, 371, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 57
HpyF3I	CTNAG	2 cut(s)	42, 99
Hsp92II	CATG	2 cut(s)	127, 146
HspAI	GCGC	3 cut(s)	12, 452, 454
Kzo9I	GATC	4 cut(s)	269, 340, 438, 541
LpnPI	CCDG	9 cut(s)	62, 122, 272, 273, 332, 378, 442, 634, 662
Lsp1109I	GCAGC	5 cut(s)	63, 95, 98, 400, 468
LweI	GCATC	6 cut(s)	151, 251, 341, 358, 439, 468
MaeI	CTAG	4 cut(s)	231, 419, 488, 494
MaeIII	GTNAC	2 cut(s)	514, 644
MalI	GATC	4 cut(s)	271, 342, 440, 543
MboI	GATC	4 cut(s)	269, 340, 438, 541
MboII	GAAGA	2 cut(s)	446, 608
MflI	RGATCY	4 cut(s)	269, 340, 438, 541
MluCI	AATT	2 cut(s)	211, 353
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	76, 84, 199, 305, 661
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	553
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	18, 57
NdeII	GATC	4 cut(s)	269, 340, 438, 541
NlaIII	CATG	2 cut(s)	127, 146
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	2 cut(s)	514, 644
NspI	RCATGY	1 cut(s)	146
PauI	GCGCGC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	469, 578
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	5 cut(s)	53, 85, 88, 390, 458
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	4 cut(s)	269, 340, 438, 541
PteI	GCGCGC	1 cut(s)	452
SatI	GCNGC	5 cut(s)	52, 84, 87, 389, 457
Sau3AI	GATC	4 cut(s)	269, 340, 438, 541
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	287
SfaNI	GCATC	6 cut(s)	151, 251, 341, 358, 439, 468
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	211, 353
SsiI	CCGC	2 cut(s)	54, 551
SspMI	CTAG	4 cut(s)	231, 419, 488, 494
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	211, 353
TfiI	GAWTC	2 cut(s)	469, 578
TscAI	CASTG	2 cut(s)	144, 351
TseFI	GTSAC	2 cut(s)	514, 644
TseI	GCWGC	5 cut(s)	51, 83, 86, 388, 456
Tsp45I	GTSAC	2 cut(s)	514, 644
TspDTI	ATGAA	4 cut(s)	204, 546, 591, 669
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	144, 351
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	353
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 343
XspI	CTAG	4 cut(s)	231, 419, 488, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.