Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

68952124 .. 68960101

Gene Structure 7978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG433900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTATGACAGCAAGCCTGATTGTTTACGCTTTCTTAAGACTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGATTTGCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGTAGTTGGCATGACTGATGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCGTCTCCTAGTGGTCAAGCATCAGAGAACTTCCTTCTAGCTTTTCATCATTTGAAAAGCATAATTGACCTCGAGGGACATTTTATTGATAAGAAAAGTTTCACATTCACCAAATCCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAGGTGATTGCATCAACAGATCCACTGGGAGATTTTGGTAAGCTGCATGATTGGGACAAATCAAAGAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAGTATCCTGATGTAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCTACCTAGAACTGGCCGGTGAAGAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTATCTCAATGGATCCGTGTCCGCATTCAGTGTTGCAAAAGACAGATGAATCAGAAAAAGTAAGTGAAGAACCTAAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGGGTATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGGCTAGTCATGTCTGGTATGTTCTGTGTTATTCATGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

309

Amino Acids

34.03

Weight (kDa)

4.85

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	46, 178
AbsI	CCTCGAGG	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	514
AccII	CGCG	1 cut(s)	631
AciI	CCGC	2 cut(s)	99, 728
AclWI	GGATC	4 cut(s)	446, 610, 713, 726
AcoI	YGGCCR	1 cut(s)	603
AcuI	CTGAAG	2 cut(s)	236, 539
AfiI	CCNNNNNNNGG	2 cut(s)	601, 884
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	197, 322
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	7 cut(s)	134, 214, 308, 475, 517, 658, 668
AluI	AGCT	7 cut(s)	134, 214, 308, 475, 517, 658, 668
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	4 cut(s)	446, 610, 713, 726
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	603, 865
ApeKI	GCWGC	5 cut(s)	96, 131, 475, 565, 633
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	3 cut(s)	59, 631, 633
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	6 cut(s)	367, 425, 448, 620, 703, 848
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	718
BauI	CACGAG	1 cut(s)	398
BbvI	GCAGC	5 cut(s)	108, 143, 462, 577, 645
BccI	CCATC	6 cut(s)	83, 148, 170, 208, 404, 827
BciVI	GTATCC	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	7 cut(s)	276, 305, 596, 665, 671, 855, 890
BfoI	RGCGCY	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	5 cut(s)	97, 132, 476, 566, 634
BlsI	GCNGC	5 cut(s)	98, 133, 477, 567, 635
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	720, 810
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	5 cut(s)	196, 296, 452, 616, 645
BmuI	ACTGGG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 884
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	2 cut(s)	462, 606
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	136, 631
BseLI	CCNNNNNNNGG	2 cut(s)	601, 884
BseMII	CTCAG	3 cut(s)	56, 101, 135
BseNI	ACTGG	2 cut(s)	462, 606
BsePI	GCGCGC	1 cut(s)	629
BseXI	GCAGC	5 cut(s)	108, 143, 462, 577, 645
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	2 cut(s)	605, 867
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	2 cut(s)	357, 500
BslI	CCNNNNNNNGG	2 cut(s)	601, 884
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	357, 500
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	605, 867
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	451, 615, 718, 843, 851
BspACI	CCGC	2 cut(s)	99, 728
BspANI	GGCC	2 cut(s)	605, 867
BspCNI	CTCAG	3 cut(s)	55, 100, 136
BspFNI	CGCG	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	2 cut(s)	720, 810
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	4 cut(s)	446, 610, 713, 726
BspTI	CTTAAG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	462, 606
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	384
BssHII	GCGCGC	1 cut(s)	629
BssMI	GATC	5 cut(s)	451, 615, 718, 843, 851
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	606
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	14, 503, 631, 660
BstDEI	CTNAG	3 cut(s)	42, 87, 144
BstF5I	GGATG	2 cut(s)	136, 631
BstFNI	CGCG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	3 cut(s)	59, 631, 633
BstKTI	GATC	5 cut(s)	454, 618, 721, 846, 854
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	5 cut(s)	451, 615, 718, 843, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 102
BstNSI	RCATGY	2 cut(s)	191, 505
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	5 cut(s)	108, 143, 462, 577, 645
BstX2I	RGATCY	4 cut(s)	451, 615, 718, 851
BstYI	RGATCY	4 cut(s)	451, 615, 718, 851
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	605, 867
BtsCI	GGATG	2 cut(s)	136, 631
BtsIMutI	CAGTG	3 cut(s)	189, 455, 741
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	4 cut(s)	14, 503, 631, 660
CaiI	CAGNNNCTG	1 cut(s)	529
CciI	TCATGA	1 cut(s)	919
CfoI	GCGC	3 cut(s)	59, 631, 633
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	803
CspCI	CAANNNNNGTGG	2 cut(s)	786, 821
CviAII	CATG	6 cut(s)	169, 188, 479, 502, 895, 920
DdeI	CTNAG	3 cut(s)	42, 87, 144
DpnI	GATC	5 cut(s)	453, 617, 720, 845, 853
DpnII	GATC	5 cut(s)	451, 615, 718, 843, 851
DrdI	GACNNNNNNGTC	2 cut(s)	46, 178
DseDI	GACNNNNNNGTC	2 cut(s)	46, 178
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	236, 539
Eco88I	CYCGRG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	6 cut(s)	172, 191, 482, 505, 898, 923
FaqI	GGGAC	2 cut(s)	357, 500
FatI	CATG	6 cut(s)	168, 187, 478, 501, 894, 919
Fnu4HI	GCNGC	5 cut(s)	97, 132, 476, 566, 634
FokI	GGATG	2 cut(s)	123, 638
Fsp4HI	GCNGC	5 cut(s)	97, 132, 476, 566, 634
FspBI	CTAG	7 cut(s)	276, 305, 596, 665, 671, 855, 890
GlaI	GCGC	3 cut(s)	58, 630, 632
GluI	GCNGC	5 cut(s)	97, 132, 476, 566, 634
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	605, 867
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	3 cut(s)	59, 631, 633
Hin1II	CATG	6 cut(s)	172, 191, 482, 505, 898, 923
Hin6I	GCGC	3 cut(s)	57, 629, 631
HinP1I	GCGC	3 cut(s)	57, 629, 631
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	40, 389, 646, 755
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	6 cut(s)	367, 425, 448, 620, 703, 848
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	9 cut(s)	45, 90, 145, 205, 292, 535, 760, 793, 851
Hpy188III	TCNNGA	4 cut(s)	239, 542, 671, 920
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	70, 261, 311
HpyCH4V	TGCA	6 cut(s)	96, 187, 209, 443, 478, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 102
HpyF3I	CTNAG	3 cut(s)	42, 87, 144
Hsp92II	CATG	6 cut(s)	172, 191, 482, 505, 898, 923
HspAI	GCGC	3 cut(s)	57, 629, 631
Kzo9I	GATC	5 cut(s)	451, 615, 718, 843, 851
LpnPI	CCDG	9 cut(s)	30, 107, 167, 443, 509, 555, 587, 619, 885
Lsp1109I	GCAGC	5 cut(s)	108, 143, 462, 577, 645
LweI	GCATC	5 cut(s)	196, 296, 452, 616, 645
MaeI	CTAG	7 cut(s)	276, 305, 596, 665, 671, 855, 890
MaeIII	GTNAC	2 cut(s)	691, 857
MalI	GATC	5 cut(s)	453, 617, 720, 845, 853
MboI	GATC	5 cut(s)	451, 615, 718, 843, 851
MboII	GAAGA	3 cut(s)	623, 785, 842
MflI	RGATCY	4 cut(s)	451, 615, 718, 851
MluCI	AATT	2 cut(s)	256, 330
MlyI	GAGTC	2 cut(s)	34, 398
MnlI	CCTC	7 cut(s)	121, 129, 244, 334, 347, 416, 888
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	36, 882, 928
MspA1I	CMGCKG	2 cut(s)	99, 517
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	730
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	63, 102
NdeII	GATC	5 cut(s)	451, 615, 718, 843, 851
NlaIII	CATG	6 cut(s)	172, 191, 482, 505, 898, 923
NlaIV	GGNNCC	2 cut(s)	720, 810
NmuCI	GTSAC	2 cut(s)	691, 857
NspI	RCATGY	2 cut(s)	191, 505
PaeI	GCATGC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	919
PauI	GCGCGC	1 cut(s)	629
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	646, 755
PkrI	GCNGC	5 cut(s)	98, 133, 477, 567, 635
PleI	GAGTC	2 cut(s)	34, 397
PpsI	GAGTC	2 cut(s)	34, 397
PspN4I	GGNNCC	2 cut(s)	720, 810
PspPI	GGNCC	1 cut(s)	248
PspXI	VCTCGAGB	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	4 cut(s)	451, 615, 718, 851
PteI	GCGCGC	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	36, 882, 928
SatI	GCNGC	5 cut(s)	97, 132, 476, 566, 634
Sau3AI	GATC	5 cut(s)	451, 615, 718, 843, 851
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	34, 398
SfaNI	GCATC	5 cut(s)	196, 296, 452, 616, 645
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	35, 237, 338
SmoI	CTYRAG	3 cut(s)	35, 237, 338
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	2 cut(s)	256, 330
SsiI	CCGC	2 cut(s)	99, 728
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	7 cut(s)	276, 305, 596, 665, 671, 855, 890
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	2 cut(s)	50, 339
TasI	AATT	2 cut(s)	256, 330
TfiI	GAWTC	2 cut(s)	646, 755
Tru1I	TTAA	3 cut(s)	36, 882, 928
Tru9I	TTAA	3 cut(s)	36, 882, 928
TscAI	CASTG	3 cut(s)	189, 462, 741
TseFI	GTSAC	2 cut(s)	691, 857
TseI	GCWGC	5 cut(s)	96, 131, 475, 565, 633
Tsp45I	GTSAC	2 cut(s)	691, 857
TspDTI	ATGAA	5 cut(s)	249, 302, 768, 843, 908
TspGWI	ACGGA	2 cut(s)	258, 711
TspRI	CASTG	3 cut(s)	189, 462, 741
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	2 cut(s)	191, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	7 cut(s)	276, 305, 596, 665, 671, 855, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.