Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

53617008 .. 53619510

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0437600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGACCATTCACTCAACCTTTTCAATTTTCCACACAAACCCAGTTTTCTTCACCCGCAAGCCTCTTAGACCCATCAAGGTTTCCATCAAACCTCCACCACCAGACTTCGATTTCAGGTCAGAAATATTGGAAGACTCGAGAGCCACAATCGCAAAAACTTACCCTGAATTGCTTGATTTGGCTGAAAATGGGAGCTTGTTCTTGGTCGATAAGAGCCGGTTCGGCCCGGTTCCCGCATGGAGAACCGAGTTCGTTGAGCCTGAGGCGATATGGTTAGTTGGAACCACTCATATTTCTCAGGACTCTGCTCTGGAGGTTGAGCGTGTAGTCCGGGCAGTGAAACCTGATAATGTGGTTGTGGAGCTATGTAGAAGCAGAGCTGGGATTATGTATGCTTCCATGGATGATGAGTTCGGTCAACAATTGAAGTCGAACATGTTCTCTTTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCAGATACCAACCGTCCTTTCGGTGATGAGTTCCGCGCTGCTCGTAAAGCCTCTGAAGAAGTTGGTGCTCAAATTGTTTTGGGGGATCGCCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACGTCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTCTCAAGGATTCAAGTACAAGTGACAGCACATTTCAGCTGTATGAGCAACTAAGTTCTTCATATCCCTCACTCCTGCAACCTCTTATACATGAACGAGACACCTACCTTGCATGGTCTTTAAAGAGGAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATCGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCAGGAGACCTACGGTTTCGAGACCTCGTAGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCATTGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

381

Amino Acids

42.36

Weight (kDa)

7.8

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TraB_PrgY_gumN	PF01963	81 - 318	1.2e-21	TraB/PrgY/gumN family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	716
AccII	CGCG	2 cut(s)	522, 591
AciI	CCGC	4 cut(s)	58, 237, 533, 589
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	2 cut(s)	525, 778
AflIII	ACRYGT	2 cut(s)	438, 520
AgsI	TTSAA	6 cut(s)	27, 430, 546, 653, 665, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	7 cut(s)	198, 367, 383, 705, 799, 896, 971
AluI	AGCT	7 cut(s)	198, 367, 383, 705, 799, 896, 971
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	4 cut(s)	767, 852, 975, 990
AlwI	GGATC	1 cut(s)	648
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	3 cut(s)	226, 937, 1016
ApeKI	GCWGC	2 cut(s)	593, 1040
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	2 cut(s)	230, 335
AsuHPI	GGTGA	3 cut(s)	46, 590, 729
AvaI	CYCGRG	1 cut(s)	139
AxyI	CCTNAGG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	580, 1027
BccI	CCATC	4 cut(s)	83, 95, 748, 1130
BceAI	ACGGC	1 cut(s)	458
BcnI	CCSGG	2 cut(s)	230, 335
BcoDI	GTCTC	4 cut(s)	767, 852, 975, 990
BglI	GCCNNNNNGGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	2 cut(s)	594, 1041
BlsI	GCNGC	2 cut(s)	595, 1042
Bme1390I	CCNGG	2 cut(s)	230, 335
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	234, 286, 472
BmrFI	CCNGG	2 cut(s)	230, 335
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	1027
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	749, 1055
BpuMI	CCSGG	2 cut(s)	230, 335
BsaHI	GRCGYC	1 cut(s)	713
BsaI	GGTCTC	2 cut(s)	975, 990
BsaJI	CCNNGG	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	412
BseMII	CTCAG	4 cut(s)	255, 314, 692, 990
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	901
BseXI	GCAGC	2 cut(s)	580, 1027
BseYI	CCCAGC	2 cut(s)	383, 1053
Bsh1236I	CGCG	2 cut(s)	522, 591
BshFI	GGCC	3 cut(s)	228, 939, 1018
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	220, 230, 334
BslFI	GGGAC	1 cut(s)	736
BsmAI	GTCTC	4 cut(s)	767, 852, 975, 990
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	228, 939, 1018
Bso31I	GGTCTC	2 cut(s)	975, 990
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	549, 640, 1128
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	4 cut(s)	58, 237, 533, 589
BspANI	GGCC	3 cut(s)	228, 939, 1018
BspCNI	CTCAG	4 cut(s)	256, 313, 693, 989
BspFNI	CGCG	2 cut(s)	522, 591
BspLI	GGNNCC	3 cut(s)	234, 286, 472
BspPI	GGATC	1 cut(s)	648
BspTNI	GGTCTC	2 cut(s)	975, 990
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	549, 640, 1128
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	569, 990
Bst6I	CTCTTC	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	7 cut(s)	68, 264, 300, 701, 706, 812, 976
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	2 cut(s)	522, 591
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	3 cut(s)	552, 643, 1131
BstMAI	GTCTC	4 cut(s)	767, 852, 975, 990
BstMBI	GATC	3 cut(s)	549, 640, 1128
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 225, 602, 805, 968
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	228, 333
BstUI	CGCG	2 cut(s)	522, 591
BstV1I	GCAGC	2 cut(s)	580, 1027
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	549
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	549
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	228, 939, 1018
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	524, 777
CviAII	CATG	8 cut(s)	240, 403, 439, 687, 851, 873, 943, 1023
CviQI	GTAC	2 cut(s)	524, 777
DdeI	CTNAG	7 cut(s)	68, 264, 300, 701, 706, 812, 976
DpnI	GATC	3 cut(s)	551, 642, 1130
DpnII	GATC	3 cut(s)	549, 640, 1128
DraI	TTTAAA	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	1018
Eco31I	GGTCTC	2 cut(s)	975, 990
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	8 cut(s)	243, 406, 442, 690, 854, 876, 946, 1026
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	8 cut(s)	239, 402, 438, 686, 850, 872, 942, 1022
FauI	CCCGC	2 cut(s)	65, 244
Fnu4HI	GCNGC	2 cut(s)	594, 1041
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	2 cut(s)	594, 1041
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	2 cut(s)	594, 1041
GsaI	CCCAGC	2 cut(s)	387, 1057
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	228, 939, 1018
HapII	CCGG	3 cut(s)	220, 230, 334
HhaI	GCGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	8 cut(s)	243, 406, 442, 690, 854, 876, 946, 1026
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	6 cut(s)	137, 305, 462, 760, 770, 974
HpaII	CCGG	3 cut(s)	220, 230, 334
HphI	GGTGA	3 cut(s)	46, 590, 729
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	6 cut(s)	124, 559, 610, 684, 745, 932
Hpy188III	TCNNGA	6 cut(s)	141, 302, 314, 662, 978, 995
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	1 cut(s)	1029
HpyCH4III	ACNGT	2 cut(s)	569, 990
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	3 cut(s)	838, 872, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 225, 602, 805, 968
HpyF3I	CTNAG	7 cut(s)	68, 264, 300, 701, 706, 812, 976
HpySE526I	ACGT	1 cut(s)	713
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	8 cut(s)	243, 406, 442, 690, 854, 876, 946, 1026
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	549, 640, 1128
LmnI	GCTCC	4 cut(s)	195, 364, 470, 888
Lsp1109I	GCAGC	2 cut(s)	580, 1027
LweI	GCATC	1 cut(s)	1027
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	2 cut(s)	709, 782
MalI	GATC	3 cut(s)	551, 642, 1130
MboI	GATC	3 cut(s)	549, 640, 1128
MboII	GAAGA	5 cut(s)	43, 146, 534, 623, 810
MfeI	CAATTG	2 cut(s)	425, 648
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	6 cut(s)	27, 170, 425, 627, 648, 676
MluI	ACGCGT	1 cut(s)	520
MlyI	GAGTC	4 cut(s)	131, 299, 769, 968
MmeI	TCCRAC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	2 cut(s)	881, 900
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	3 cut(s)	220, 230, 334
MspR9I	CCNGG	2 cut(s)	230, 335
MunI	CAATTG	2 cut(s)	425, 648
MvnI	CGCG	2 cut(s)	522, 591
MwoI	GCNNNNNNNGC	5 cut(s)	152, 225, 602, 805, 968
NciI	CCSGG	2 cut(s)	230, 335
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	549, 640, 1128
NlaIII	CATG	8 cut(s)	243, 406, 442, 690, 854, 876, 946, 1026
NlaIV	GGNNCC	3 cut(s)	234, 286, 472
NmuCI	GTSAC	2 cut(s)	709, 782
NspI	RCATGY	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	1018
PciI	ACATGT	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	462, 770
PkrI	GCNGC	2 cut(s)	595, 1042
PleI	GAGTC	4 cut(s)	131, 299, 768, 968
PpsI	GAGTC	4 cut(s)	131, 299, 768, 968
PscI	ACATGT	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	383, 1053
PspN4I	GGNNCC	3 cut(s)	234, 286, 472
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	549
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	2 cut(s)	525, 778
RsaNI	GTAC	2 cut(s)	524, 777
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	2 cut(s)	881, 900
SatI	GCNGC	2 cut(s)	594, 1041
Sau3AI	GATC	3 cut(s)	549, 640, 1128
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	4 cut(s)	131, 299, 769, 968
ScrFI	CCNGG	2 cut(s)	230, 335
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	1027
Sfr274I	CTCGAG	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	3 cut(s)	139, 764, 1070
SmoI	CTYRAG	3 cut(s)	139, 764, 1070
Sse9I	AATT	6 cut(s)	27, 170, 425, 627, 648, 676
SseBI	AGGCCT	1 cut(s)	1018
SsiI	CCGC	4 cut(s)	58, 237, 533, 589
SspI	AATATT	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	1018
StyD4I	CCNGG	2 cut(s)	228, 333
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	569, 990
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	5 cut(s)	111, 140, 210, 434, 994
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	6 cut(s)	27, 170, 425, 627, 648, 676
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	462, 770
Tru1I	TTAA	2 cut(s)	881, 900
Tru9I	TTAA	2 cut(s)	881, 900
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	709, 782
TseI	GCWGC	2 cut(s)	593, 1040
Tsp45I	GTSAC	2 cut(s)	709, 782
TspDTI	ATGAA	4 cut(s)	810, 867, 959, 1011
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.