Rh7AG254800

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001692
Physical Location & Seq
Reverse (-)
25674762 .. 25686724
11963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG254800.1

Sequence Viewer

Length: 252 bp
ATGGGCGGCGGCGGCGGTCGAGTTGGACTTGGTGATTTAAAGGAGATTGCTTCGCTCCTTGAGACCGCTGCGTATACCAAGGAGGTCCGGCGAGTTGTCCGCGCCGTTAGGCTGAAGATGGCGAAGAGGCGGAAGCTGAGTGTTTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTTTCGCCGGGATCTAAGGCTCACACCAAGCTACACAATTATATTGCAAAGAAGATAGGTTGTCCTCCTATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI Rpn3_C

Protein Analysis

83

Amino Acids

8.96

Weight (kDa)

10.83

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 74
AccII CGCG 1 cut(s) 102
AciI CCGC 7 cut(s) 6, 9, 12, 15, 66, 100, 130
AclWI GGATC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 134
AluBI AGCT 2 cut(s) 136, 205
AluI AGCT 2 cut(s) 136, 205
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 4 cut(s) 7, 10, 13, 69
BlsI GCNGC 4 cut(s) 8, 11, 14, 70
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 128, 178
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 88, 182
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 7 cut(s) 6, 9, 12, 15, 66, 100, 130
BspCNI CTCAG 2 cut(s) 129, 177
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 185
BssNAI GTATAC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 78
Bst1107I GTATAC 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 137, 164, 189
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 185
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BstZ17I GTATAC 1 cut(s) 75
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 85
CviJI RGCY 4 cut(s) 112, 136, 194, 205
CviKI_1 RGCY 4 cut(s) 112, 136, 194, 205
DdeI CTNAG 3 cut(s) 137, 164, 189
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 2 cut(s) 75, 216
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 7, 10, 13, 69
Fsp4HI GCNGC 4 cut(s) 7, 10, 13, 69
GlaI GCGC 1 cut(s) 103
GluI GCNGC 4 cut(s) 7, 10, 13, 69
HapII CCGG 2 cut(s) 88, 182
HhaI GCGC 1 cut(s) 104
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HpaII CCGG 2 cut(s) 88, 182
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 137, 164, 189
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 2 cut(s) 101, 195
Lsp1109I GCAGC 1 cut(s) 55
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 4 cut(s) 127, 136, 238, 238
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 3 cut(s) 76, 120, 249
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 88, 182
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 185
NmeAIII GCCGAG 1 cut(s) 134
PkrI GCNGC 4 cut(s) 8, 11, 14, 70
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 4 cut(s) 7, 10, 13, 69
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 87, 138, 207, 235
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 211
SsiI CCGC 7 cut(s) 6, 9, 12, 15, 66, 100, 130
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 211
TauI GCSGC 3 cut(s) 9, 12, 15
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.