Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

25690233 .. 25692183

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAGGGACGAAAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGAGATTTATCATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

126

Amino Acids

14.87

Weight (kDa)

5.09

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	69 - 122	5.5e-08	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	126, 244
AgsI	TTSAA	3 cut(s)	253, 269, 331
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	137, 318
AluI	AGCT	2 cut(s)	137, 318
AoxI	GGCC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	126, 244
AspS9I	GGNCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	321
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	150
BfaI	CTAG	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	57, 162
Bst6I	CTCTTC	2 cut(s)	66, 191
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	294
CviAII	CATG	3 cut(s)	5, 85, 191
CviJI	RGCY	4 cut(s)	137, 182, 296, 318
CviKI_1	RGCY	4 cut(s)	137, 182, 296, 318
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	66, 191
EarI	CTCTTC	2 cut(s)	66, 191
Eco130I	CCWWGG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	8, 88, 194
FaiI	YATR	6 cut(s)	6, 86, 192, 292, 303, 374
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	4, 84, 190
FbaI	TGATCA	1 cut(s)	150
FspBI	CTAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	8, 88, 194
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	141, 228
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	61, 136
HpyCH4III	ACNGT	2 cut(s)	57, 162
HpyCH4V	TGCA	4 cut(s)	4, 22, 233, 359
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	8, 88, 194
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	5 cut(s)	116, 164, 191, 250, 304
MaeI	CTAG	1 cut(s)	306
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	4 cut(s)	20, 76, 83, 208
MluCI	AATT	3 cut(s)	126, 244, 269
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	43, 67
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	8, 88, 194
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	2 cut(s)	139, 320
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	126, 244, 269
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	57, 162
TasI	AATT	3 cut(s)	126, 244, 269
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	21, 53, 138, 159, 179
XapI	RAATTY	2 cut(s)	126, 244
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.