Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

73463998 .. 73466178

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG459300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAGGGACAAAAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGAGATTTATCATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

126

Amino Acids

14.87

Weight (kDa)

5.41

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	69 - 122	5.3e-08	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	126, 244
AgsI	TTSAA	3 cut(s)	253, 269, 331
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	137, 318
AluI	AGCT	2 cut(s)	137, 318
AoxI	GGCC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	126, 244
AspS9I	GGNCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	321
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	150
BfaI	CTAG	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	57, 162
Bst6I	CTCTTC	2 cut(s)	66, 191
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	294
CviAII	CATG	3 cut(s)	5, 85, 191
CviJI	RGCY	4 cut(s)	137, 182, 296, 318
CviKI_1	RGCY	4 cut(s)	137, 182, 296, 318
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	66, 191
EarI	CTCTTC	2 cut(s)	66, 191
Eco130I	CCWWGG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	8, 88, 194
FaiI	YATR	6 cut(s)	6, 86, 192, 292, 303, 374
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	4, 84, 190
FbaI	TGATCA	1 cut(s)	150
FspBI	CTAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	8, 88, 194
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	141, 228
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	61, 136
HpyCH4III	ACNGT	2 cut(s)	57, 162
HpyCH4V	TGCA	4 cut(s)	4, 22, 233, 359
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	8, 88, 194
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	5 cut(s)	116, 164, 191, 250, 304
MaeI	CTAG	1 cut(s)	306
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	4 cut(s)	20, 76, 83, 208
MluCI	AATT	3 cut(s)	126, 244, 269
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	43, 67
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	8, 88, 194
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	2 cut(s)	139, 320
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	126, 244, 269
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	57, 162
TasI	AATT	3 cut(s)	126, 244, 269
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	21, 53, 138, 159, 179
XapI	RAATTY	2 cut(s)	126, 244
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.