Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008656.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

2548 .. 2877

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008656.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgagtgcgtacattgttcttcaagggatcagttgtgtttttgaaggaggacataagattggtattgttggccggataggcagtgggaagtctacactcatccgtgctctacttcggctagttgaaccaattagaaggaagattatggtcgatggcattgacctctgcactatagtacttcatgatgtgaggtcaagatttggaataatacctcaagaccctactctctttaatggcacagtcagatacaatttggaccgcttatctcaacattcagaacaggaaatatgggaggtgagaatcaagttctgtaatgcttgttttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

109

Amino Acids

12.31

Weight (kDa)

9.13

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	70
AfaI	GTAC	2 cut(s)	11, 177
AgsI	TTSAA	3 cut(s)	23, 44, 125
Alw21I	GWGCWC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	73
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	1 cut(s)	35
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	10, 176
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	2 cut(s)	72, 118
CviKI_1	RGCY	2 cut(s)	72, 118
CviQI	GTAC	2 cut(s)	10, 176
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	256
FaeI	CATG	1 cut(s)	185
FaiI	YATR	5 cut(s)	54, 146, 173, 183, 289
FatI	CATG	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	92
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	245, 277
Hpy188III	TCNNGA	3 cut(s)	182, 195, 215
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	38, 129
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	2 cut(s)	86, 266
MaeI	CTAG	1 cut(s)	119
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	2 cut(s)	11, 151
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	129, 250
MnlI	CCTC	5 cut(s)	41, 173, 183, 222, 286
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	185
PagI	TCATGA	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	11, 177
RsaNI	GTAC	2 cut(s)	10, 176
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	4 cut(s)	165, 194, 214, 297
SfcI	CTRYAG	1 cut(s)	171
SgeI	CNNG	9 cut(s)	35, 85, 116, 131, 194, 207, 227, 293, 316
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	129, 250
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	129, 250
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.