Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015720.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

31028 .. 32310

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015720.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgcatcctgaaggatcttctgccagagcttcttggccttatgtagaaagcaaaacttatatgtggacatggttgtttgtggtgcccctggtcgcatactccctatggcagcttttgtattttctcattgtcaacgttttatgccgacaaaggctgttaagggatcctgaagtgatgacttcttacagagaactctcgaagaaggcgcaaaaagcaaacaatttgtggtggcgcttaagcgttggtttgggtcttgaggcatcaagggctttattttctcagctactaaactctctatttcatgcacccatgtctttctatgactcaacgcctttgggaaggatactaagtcggctttcatctgatccaagtatcgtagatcttgatattccattcagccttgtcttttcttgtggagctaccataaatgcttactccaatcttggaatactagctgctgttacatgtatgtcttcctttcagaaatattacttttccactgcaaaggagttgatgaggatcaatggaacaactaagtcttttgtagcaaatcatctagcagagtctgtatcaggcgccattacaataagagctttcaatgaagaagagcgcttcttggcaaagaattttcacctcattgacacaaatgctagcccattttttcatagttttgcagcaaatgagtggttgattcaacggttagaaataatttgcgcagcagttctcgcctctgcagcactctgtatggttttgcttccaactggaacttttagctctggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

260

Amino Acids

29.17

Weight (kDa)

8.59

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	715
AccB1I	GGYRCC	2 cut(s)	82, 575
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	5 cut(s)	22, 158, 171, 359, 527
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	30, 189
AcyI	GRCGYC	1 cut(s)	576
AfeI	AGCGCT	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	598, 695
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	7 cut(s)	29, 112, 283, 419, 455, 593, 774
AluI	AGCT	7 cut(s)	29, 112, 283, 419, 455, 593, 774
AlwI	GGATC	5 cut(s)	22, 158, 171, 359, 527
AlwNI	CAGNNNCTG	1 cut(s)	566
Aor51HI	AGCGCT	1 cut(s)	611
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	5 cut(s)	109, 455, 674, 716, 734
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	5 cut(s)	208, 234, 578, 612, 716
AsuHPI	GGTGA	1 cut(s)	623
AsuNHI	GCTAGC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	82, 575
BbsI	GAAGAC	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	121, 442, 686, 728, 746
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	336
BfaI	CTAG	3 cut(s)	452, 557, 651
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	3 cut(s)	235, 579, 613
BfrI	CTTAAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	5 cut(s)	110, 456, 675, 717, 735
BlsI	GCNGC	5 cut(s)	111, 457, 676, 718, 736
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	84, 165, 577
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	13, 269
BmtI	GCTAGC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	766
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	4
BseJI	GATNNNNATC	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	766
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	5 cut(s)	121, 442, 686, 728, 746
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	2 cut(s)	82, 575
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	14, 163, 364, 379, 519
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	84, 165, 577
BspMAI	CTGCAG	1 cut(s)	736
BspOI	GCTAGC	1 cut(s)	654
BspPI	GGATC	5 cut(s)	22, 158, 171, 359, 527
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	82, 575
BspTI	CTTAAG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	5 cut(s)	14, 163, 364, 379, 519
BssNI	GRCGYC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	3 cut(s)	279, 347, 534
BstF5I	GGATG	1 cut(s)	4
BstH2I	RGCGCY	3 cut(s)	235, 579, 613
BstHHI	GCGC	5 cut(s)	208, 234, 578, 612, 716
BstKTI	GATC	5 cut(s)	17, 166, 367, 382, 522
BstMBI	GATC	5 cut(s)	14, 163, 364, 379, 519
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 266, 725, 734
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	121, 442, 686, 728, 746
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	3 cut(s)	14, 163, 379
BstYI	RGATCY	3 cut(s)	14, 163, 379
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	4
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	652
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	5 cut(s)	208, 234, 578, 612, 716
CviAII	CATG	4 cut(s)	69, 302, 310, 465
DdeI	CTNAG	3 cut(s)	279, 347, 534
DinI	GGCGCC	1 cut(s)	577
DpnI	GATC	5 cut(s)	16, 165, 366, 381, 521
DpnII	GATC	5 cut(s)	14, 163, 364, 379, 519
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco47III	AGCGCT	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	30, 189
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	577
EheI	GGCGCC	1 cut(s)	577
FaeI	CATG	4 cut(s)	72, 305, 313, 468
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	4 cut(s)	68, 301, 309, 464
Fnu4HI	GCNGC	5 cut(s)	110, 456, 675, 717, 735
Fsp4HI	GCNGC	5 cut(s)	110, 456, 675, 717, 735
FspBI	CTAG	3 cut(s)	452, 557, 651
FspI	TGCGCA	1 cut(s)	715
GlaI	GCGC	5 cut(s)	207, 233, 577, 611, 715
GluI	GCNGC	5 cut(s)	110, 456, 675, 717, 735
HaeII	RGCGCY	3 cut(s)	235, 579, 613
HaeIII	GGCC	1 cut(s)	37
HhaI	GCGC	5 cut(s)	208, 234, 578, 612, 716
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	4 cut(s)	72, 305, 313, 468
Hin6I	GCGC	5 cut(s)	206, 232, 576, 610, 714
HinP1I	GCGC	5 cut(s)	206, 232, 576, 610, 714
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	323, 563, 691
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	66, 133
Hpy188I	TCNGA	2 cut(s)	364, 483
Hpy188III	TCNNGA	5 cut(s)	8, 167, 196, 254, 383
Hpy8I	GTNNAC	2 cut(s)	66, 133
HpyAV	CCTTC	3 cut(s)	5, 196, 333
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	4, 305, 503, 674, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 266, 725, 734
HpyF3I	CTNAG	3 cut(s)	279, 347, 534
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	72, 305, 313, 468
HspAI	GCGC	5 cut(s)	206, 232, 576, 610, 714
KasI	GGCGCC	1 cut(s)	575
Kzo9I	GATC	5 cut(s)	14, 163, 364, 379, 519
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	8 cut(s)	21, 37, 74, 101, 180, 558, 747, 762
Lsp1109I	GCAGC	5 cut(s)	121, 442, 686, 728, 746
LweI	GCATC	2 cut(s)	13, 269
MaeI	CTAG	3 cut(s)	452, 557, 651
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	5 cut(s)	16, 165, 366, 381, 521
MboI	GATC	5 cut(s)	14, 163, 364, 379, 519
MboII	GAAGA	5 cut(s)	9, 211, 465, 614, 617
MflI	RGATCY	3 cut(s)	14, 163, 379
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	220, 625, 708
Mly113I	GGCGCC	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	317, 572
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	4 cut(s)	250, 510, 644, 739
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	158, 236
MspCI	CTTAAG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	212, 266, 725, 734
NarI	GGCGCC	1 cut(s)	576
NdeII	GATC	5 cut(s)	14, 163, 364, 379, 519
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	4 cut(s)	72, 305, 313, 468
NlaIV	GGNNCC	3 cut(s)	84, 165, 577
NsbI	TGCGCA	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	468
PciI	ACATGT	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	5 cut(s)	111, 457, 676, 718, 736
PleI	GAGTC	2 cut(s)	317, 571
PluTI	GGCGCC	1 cut(s)	579
PpsI	GAGTC	2 cut(s)	317, 571
PscI	ACATGT	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	84, 165, 577
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	3 cut(s)	14, 163, 379
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	158, 236
SatI	GCNGC	5 cut(s)	110, 456, 675, 717, 735
Sau3AI	GATC	5 cut(s)	14, 163, 364, 379, 519
SchI	GAGTC	2 cut(s)	317, 572
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	31, 114, 138, 285, 421, 457, 595, 636, 776
SfaNI	GCATC	2 cut(s)	13, 269
SfcI	CTRYAG	1 cut(s)	732
SfoI	GGCGCC	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	235, 254
SmoI	CTYRAG	2 cut(s)	235, 254
Sse9I	AATT	3 cut(s)	220, 625, 708
SspDI	GGCGCC	1 cut(s)	575
SspI	AATATT	1 cut(s)	488
SspMI	CTAG	3 cut(s)	452, 557, 651
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	220, 625, 708
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	2 cut(s)	158, 236
Tru9I	TTAA	2 cut(s)	158, 236
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	5 cut(s)	109, 455, 674, 716, 734
TspDTI	ATGAA	4 cut(s)	290, 348, 615, 653
TspRI	CASTG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	468
XspI	CTAG	3 cut(s)	452, 557, 651
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.