Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

56197118 .. 56199165

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGTACTCCTTGCTTAACATATTTGAGTCTTCTTCATCAGAGCATGTTTGTTTCCATACCAATGGTCTTTATGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGGGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

6.89

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	8 - 143	3.8e-09	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	205, 302, 444, 449
AluBI	AGCT	3 cut(s)	85, 200, 381
AluI	AGCT	3 cut(s)	85, 200, 381
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	281, 323, 341
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	3 cut(s)	185, 219, 403
AsuHPI	GGTGA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	293, 335, 353
BfaI	CTAG	3 cut(s)	164, 258, 454
BfmI	CTRYAG	2 cut(s)	86, 339
BfoI	RGCGCY	3 cut(s)	186, 220, 404
BisI	GCNGC	3 cut(s)	282, 324, 342
BlsI	GCNGC	3 cut(s)	283, 325, 343
BmiI	GGNNCC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	125
BseJI	GATNNNNATC	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	293, 335, 353
BshNI	GGYRCC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	126, 435
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	126, 435
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	259
BstH2I	RGCGCY	3 cut(s)	186, 220, 404
BstHHI	GCGC	3 cut(s)	185, 219, 403
BstKTI	GATC	2 cut(s)	129, 438
BstMBI	GATC	2 cut(s)	126, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 341
BstNSI	RCATGY	2 cut(s)	49, 430
BstSFI	CTRYAG	2 cut(s)	86, 339
BstV1I	GCAGC	3 cut(s)	293, 335, 353
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	3 cut(s)	185, 219, 403
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	46, 427
CviJI	RGCY	4 cut(s)	85, 200, 261, 381
CviKI_1	RGCY	4 cut(s)	85, 200, 261, 381
CviQI	GTAC	1 cut(s)	6
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	2 cut(s)	128, 437
DpnII	GATC	2 cut(s)	126, 435
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
FaeI	CATG	2 cut(s)	49, 430
FaiI	YATR	8 cut(s)	22, 47, 59, 74, 273, 353, 411, 428
FatI	CATG	2 cut(s)	45, 426
Fnu4HI	GCNGC	3 cut(s)	282, 324, 342
Fsp4HI	GCNGC	3 cut(s)	282, 324, 342
FspBI	CTAG	3 cut(s)	164, 258, 454
GlaI	GCGC	3 cut(s)	184, 218, 402
GluI	GCNGC	3 cut(s)	282, 324, 342
HaeII	RGCGCY	3 cut(s)	186, 220, 404
HhaI	GCGC	3 cut(s)	185, 219, 403
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	49, 430
Hin6I	GCGC	3 cut(s)	183, 217, 401
HinP1I	GCGC	3 cut(s)	183, 217, 401
HinfI	GANTC	3 cut(s)	28, 170, 298
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	110, 281, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 341
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	49, 430
HspAI	GCGC	3 cut(s)	183, 217, 401
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	126, 435
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	3 cut(s)	165, 354, 369
Lsp1109I	GCAGC	3 cut(s)	293, 335, 353
MaeI	CTAG	3 cut(s)	164, 258, 454
MalI	GATC	2 cut(s)	128, 437
MboI	GATC	2 cut(s)	126, 435
MboII	GAAGA	4 cut(s)	23, 26, 221, 224
MluCI	AATT	4 cut(s)	78, 232, 315, 444
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	37, 179
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	3 cut(s)	117, 251, 346
MseI	TTAA	2 cut(s)	17, 422
MslI	CAYNNNNRTG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	332, 341
NarI	GGCGCC	1 cut(s)	183
NdeII	GATC	2 cut(s)	126, 435
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	49, 430
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	2 cut(s)	49, 430
PciI	ACATGT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	283, 325, 343
PleI	GAGTC	2 cut(s)	36, 178
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	2 cut(s)	36, 178
PscI	ACATGT	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	17, 422
SatI	GCNGC	3 cut(s)	282, 324, 342
Sau3AI	GATC	2 cut(s)	126, 435
SchI	GAGTC	2 cut(s)	37, 179
SetI	ASST	4 cut(s)	87, 202, 243, 383
SfcI	CTRYAG	2 cut(s)	86, 339
SfoI	GGCGCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	78, 232, 315, 444
SspDI	GGCGCC	1 cut(s)	182
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	3 cut(s)	164, 258, 454
TaaI	ACNGT	1 cut(s)	306
TasI	AATT	4 cut(s)	78, 232, 315, 444
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	17, 422
Tru9I	TTAA	2 cut(s)	17, 422
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	3 cut(s)	281, 323, 341
TspDTI	ATGAA	4 cut(s)	26, 222, 260, 408
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	2 cut(s)	49, 430
XspI	CTAG	3 cut(s)	164, 258, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.