Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

26963213 .. 26979920

Gene Structure 16708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG271500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAGGGACGAAAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGCCAAACACACAAATTCCAAAACCCAACTTTTCACGTGTATATCCATACCCACCGAATCAAGCTGATTTAAAGGAGATTGCTTCGCTCCTTGAGACCGCTGCGTATACCAAGGAGGTCCGGCGAGTTGTCCGCGCCGTTAGGCTGAAGATGGCGAAGAGGCGGAAGCTGAGTGTTTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTTTCGCCGGGATCTAAGGCTCACACCAAGCTACACAATTATATTGCAAAGAAGATAGGTTGTCCTCCTATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

214

Amino Acids

24.67

Weight (kDa)

9.28

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	69 - 115	4e-07	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	1 cut(s)	495
AciI	CCGC	3 cut(s)	459, 493, 523
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	3 cut(s)	126, 244, 375
AcuI	CTGAAG	1 cut(s)	527
AcvI	CACGTG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	253, 269, 331
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	137, 318, 425, 529, 598
AluI	AGCT	5 cut(s)	137, 318, 425, 529, 598
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	586
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	3 cut(s)	126, 244, 375
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	2 cut(s)	294, 478
AsuC2I	CCSGG	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	321
BbrPI	CACGTG	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	5, 505
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	179, 576
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	294, 478
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	179, 576
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	576
BsaAI	YACGTR	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	84, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	84, 471
BseMII	CTCAG	3 cut(s)	152, 521, 571
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	481, 575
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	150, 578
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	3 cut(s)	459, 493, 523
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	3 cut(s)	151, 522, 570
BspFNI	CGCG	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	84, 471
BssMI	GATC	2 cut(s)	150, 578
BssNAI	GTATAC	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	84, 471
Bst1107I	GTATAC	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	57, 162
Bst6I	CTCTTC	3 cut(s)	66, 191, 512
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	138, 530, 557, 582
BstDSI	CCRYGG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	153, 581
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	150, 578
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	177, 574
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BstZ17I	GTATAC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	294, 478
CviAII	CATG	3 cut(s)	5, 85, 191
DdeI	CTNAG	4 cut(s)	138, 530, 557, 582
DpnI	GATC	2 cut(s)	152, 580
DpnII	GATC	2 cut(s)	150, 578
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	3 cut(s)	66, 191, 512
EarI	CTCTTC	3 cut(s)	66, 191, 512
EciI	GGCGGA	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	84, 471
Eco31I	GGTCTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	527
Eco72I	CACGTG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	84, 471
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	84, 471
FaeI	CATG	3 cut(s)	8, 88, 194
FaiI	YATR	9 cut(s)	6, 86, 192, 292, 303, 403, 409, 468, 609
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	4, 84, 190
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	481, 575
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	8, 88, 194
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	167, 418
HpaII	CCGG	2 cut(s)	481, 575
Hpy166II	GTNNAC	2 cut(s)	211, 468
Hpy188I	TCNGA	3 cut(s)	141, 228, 644
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	2 cut(s)	211, 468
HpyAV	CCTTC	2 cut(s)	61, 136
HpyCH4III	ACNGT	2 cut(s)	57, 162
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	4, 22, 233, 359, 614
HpyF3I	CTNAG	4 cut(s)	138, 530, 557, 582
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	8, 88, 194
HspAI	GCGC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 578
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	7 cut(s)	116, 164, 191, 250, 304, 494, 588
Lsp1109I	GCAGC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	152, 580
MboI	GATC	2 cut(s)	150, 578
MboII	GAAGA	8 cut(s)	20, 76, 83, 208, 520, 529, 631, 631
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	5 cut(s)	126, 244, 269, 375, 604
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	43, 67, 469, 513, 642
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	59, 431
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	481, 575
MspR9I	CCNGG	2 cut(s)	179, 576
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	495
NciI	CCSGG	1 cut(s)	576
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	150, 578
NlaIII	CATG	3 cut(s)	8, 88, 194
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	167, 418
PkrI	GCNGC	1 cut(s)	463
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	294, 478
PsuI	RGATCY	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	59, 431
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	150, 578
Sau96I	GGNCC	2 cut(s)	294, 478
ScrFI	CCNGG	2 cut(s)	179, 576
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	8 cut(s)	139, 320, 400, 427, 480, 531, 600, 628
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	126, 244, 269, 375, 604
SsiI	CCGC	3 cut(s)	459, 493, 523
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	177, 574
StyI	CCWWGG	2 cut(s)	84, 471
TaaI	ACNGT	2 cut(s)	57, 162
TaiI	ACGT	1 cut(s)	400
TasI	AATT	5 cut(s)	126, 244, 269, 375, 604
TfiI	GAWTC	2 cut(s)	167, 418
Tru1I	TTAA	2 cut(s)	59, 431
Tru9I	TTAA	2 cut(s)	59, 431
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	5 cut(s)	21, 53, 138, 159, 179
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	3 cut(s)	126, 244, 375
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.