Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

65716847 .. 65717601

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCACTTTCTTATGGTCTATCATTAAATGTGTCCTTGATCGACTCAATTCAGAACCAGTGCACTATAGCAAATTATATCATTTCTGTTGAAAGACTAAATCAATACATGCACATTCCTAGTGAAGCCCCGGAAGTAATGGAGGGAAACCGTCCACCAGCCAACTGGCCTGTCGTAGGAAAAGTGGATATACAAAATTTGCGGATGAGATATAGGGATGACACACCACTTGTACTTCGAGGGATTAGTTGTGTTTTTGAAGGACGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTCATCAGCGCTCTATTTCGGCTGGTCGAGCCAGCCGGAGGGAAGGTCATAGTCGATGGCATTGACATCTCTACTATAGGACTTCATGATCTGAGGTCAAGATTCGGAATAATACCTCAAGACCCTACTCTCTTTAATGGCACCGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAAGAAATATGGGAGGTGAGAATCAAATTCTGTAATGCTTGTTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

181

Amino Acids

20.18

Weight (kDa)

6.89

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	80 - 172	7.3e-15	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	196, 521
AfaI	GTAC	1 cut(s)	234
AfeI	AGCGCT	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	176, 350
AgsI	TTSAA	2 cut(s)	92, 260
Alw21I	GWGCWC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	322
AoxI	GGCC	2 cut(s)	167, 286
ApaLI	GTGCAC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	196, 521
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	65
BccI	CCATC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	2 cut(s)	66, 387
BfoI	RGCGCY	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	454, 474
BmrFI	CCNGG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 350
Bse1I	ACTGG	2 cut(s)	58, 170
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	210, 223
BseLI	CCNNNNNNNGG	2 cut(s)	176, 350
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	58, 170
BseSI	GKGCMC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	169, 288
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	131, 289, 348
BslI	CCNNNNNNNGG	2 cut(s)	176, 350
BsnI	GGCC	2 cut(s)	169, 288
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	39, 400
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	169, 288
BspCNI	CTCAG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	454, 474
BspT107I	GGYRCC	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	58, 170
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	39, 400
Bst4CI	ACNGT	2 cut(s)	152, 457
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	404
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	210, 223
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	42, 403
BstMBI	GATC	2 cut(s)	39, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 340
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	66, 387
BstSLI	GKGCMC	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	169, 288
BtsCI	GGATG	2 cut(s)	210, 223
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	65, 304
Cac8I	GCNNGC	1 cut(s)	345
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	2 cut(s)	109, 398
CviJI	RGCY	7 cut(s)	128, 161, 169, 288, 334, 343, 347
CviKI_1	RGCY	7 cut(s)	128, 161, 169, 288, 334, 343, 347
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	2 cut(s)	41, 402
DpnII	GATC	2 cut(s)	39, 400
EaeI	YGGCCR	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	472
Eco47III	AGCGCT	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	112, 401
FatI	CATG	2 cut(s)	108, 397
FblI	GTMKAC	1 cut(s)	308
FokI	GGATG	2 cut(s)	217, 230
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	322
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	169, 288
HapII	CCGG	3 cut(s)	131, 289, 348
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	112, 401
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	44, 414, 516
HpaII	CCGG	3 cut(s)	131, 289, 348
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	63, 155, 309
Hpy188I	TCNGA	5 cut(s)	54, 405, 419, 461, 493
Hpy188III	TCNNGA	3 cut(s)	398, 411, 431
Hpy8I	GTNNAC	3 cut(s)	63, 155, 309
HpyAV	CCTTC	2 cut(s)	254, 349
HpyCH4III	ACNGT	2 cut(s)	152, 457
HpyCH4V	TGCA	2 cut(s)	63, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 340
HpyF3I	CTNAG	1 cut(s)	404
Hsp92II	CATG	2 cut(s)	112, 401
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	39, 400
MaeI	CTAG	1 cut(s)	120
MalI	GATC	2 cut(s)	41, 402
MboI	GATC	2 cut(s)	39, 400
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	5 cut(s)	48, 73, 196, 466, 521
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	6 cut(s)	136, 233, 344, 399, 438, 502
MseI	TTAA	2 cut(s)	26, 447
MspI	CCGG	3 cut(s)	131, 289, 348
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	294, 340
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	39, 400
NlaIII	CATG	2 cut(s)	112, 401
NlaIV	GGNNCC	2 cut(s)	454, 474
NspI	RCATGY	1 cut(s)	112
PagI	TCATGA	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	414, 516
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	454, 474
PspPI	GGNCC	1 cut(s)	472
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	26, 447
Sau3AI	GATC	2 cut(s)	39, 400
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	360, 410, 430, 513
SfcI	CTRYAG	2 cut(s)	66, 387
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	5 cut(s)	48, 73, 196, 466, 521
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	152, 457
TaqI	TCGA	4 cut(s)	42, 238, 339, 366
TasI	AATT	5 cut(s)	48, 73, 196, 466, 521
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	414, 516
Tru1I	TTAA	2 cut(s)	26, 447
Tru9I	TTAA	2 cut(s)	26, 447
TscAI	CASTG	2 cut(s)	65, 304
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	65, 304
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	2 cut(s)	196, 521
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.