Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

1133396 .. 1133724

Gene Structure 329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

70

Amino Acids

7.98

Weight (kDa)

8.14

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	2 cut(s)	22, 137
AluI	AGCT	2 cut(s)	22, 137
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	122, 156
AsuHPI	GGTGA	1 cut(s)	167
AsuNHI	GCTAGC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	101, 195
BfmI	CTRYAG	1 cut(s)	23
BfoI	RGCGCY	2 cut(s)	123, 157
BmiI	GGNNCC	1 cut(s)	121
BmtI	GCTAGC	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	119
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	196
BstH2I	RGCGCY	2 cut(s)	123, 157
BstHHI	GCGC	2 cut(s)	122, 156
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	2 cut(s)	122, 156
CviJI	RGCY	3 cut(s)	22, 137, 198
CviKI_1	RGCY	3 cut(s)	22, 137, 198
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco47III	AGCGCT	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
FaiI	YATR	1 cut(s)	211
FspBI	CTAG	2 cut(s)	101, 195
FspEI	CC	9 cut(s)	35, 46, 54, 55, 91, 102, 136, 146, 191
GlaI	GCGC	2 cut(s)	121, 155
HaeII	RGCGCY	2 cut(s)	123, 157
HhaI	GCGC	2 cut(s)	122, 156
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	2 cut(s)	120, 154
HinP1I	GCGC	2 cut(s)	120, 154
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	2 cut(s)	120, 154
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	1 cut(s)	102
MaeI	CTAG	2 cut(s)	101, 195
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	158, 161
MluCI	AATT	2 cut(s)	15, 169
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	54, 188
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	1 cut(s)	63
NheI	GCTAGC	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	116
SetI	ASST	3 cut(s)	24, 139, 180
SfcI	CTRYAG	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	121
SgeI	CNNG	6 cut(s)	23, 91, 113, 129, 172, 207
Sse9I	AATT	2 cut(s)	15, 169
SspDI	GGCGCC	1 cut(s)	119
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	101, 195
TasI	AATT	2 cut(s)	15, 169
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	159, 198
TspRI	CASTG	1 cut(s)	49
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	2 cut(s)	101, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.