Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

6662673 .. 6663150

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTCTTTTGCGTGGAAACTTCTTTATATGACACAGTATGTCTTCCTTTCAGAAATATTACTTTTCCACACTTTTCCACTACAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

131

Amino Acids

14.85

Weight (kDa)

6.17

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	29 - 121	3.3e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	156
AfeI	AGCGCT	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	178, 275
AluBI	AGCT	2 cut(s)	173, 354
AluI	AGCT	2 cut(s)	173, 354
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	191
ApeKI	GCWGC	3 cut(s)	254, 296, 314
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	4 cut(s)	158, 192, 296, 375
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	266, 308, 326
BfaI	CTAG	2 cut(s)	137, 231
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	3 cut(s)	159, 193, 376
BisI	GCNGC	3 cut(s)	255, 297, 315
BlsI	GCNGC	3 cut(s)	256, 298, 316
BmiI	GGNNCC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	266, 308, 326
BshNI	GGYRCC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	316
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	37, 279
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	232
BstH2I	RGCGCY	3 cut(s)	159, 193, 376
BstHHI	GCGC	4 cut(s)	158, 192, 296, 375
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 314
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	266, 308, 326
BstV2I	GAAGAC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	4 cut(s)	158, 192, 296, 375
CviJI	RGCY	3 cut(s)	173, 234, 354
CviKI_1	RGCY	3 cut(s)	173, 234, 354
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaiI	YATR	6 cut(s)	28, 30, 40, 246, 326, 383
Fnu4HI	GCNGC	3 cut(s)	255, 297, 315
Fsp4HI	GCNGC	3 cut(s)	255, 297, 315
FspBI	CTAG	2 cut(s)	137, 231
FspI	TGCGCA	1 cut(s)	295
GlaI	GCGC	4 cut(s)	157, 191, 295, 374
GluI	GCNGC	3 cut(s)	255, 297, 315
HaeII	RGCGCY	3 cut(s)	159, 193, 376
HhaI	GCGC	4 cut(s)	158, 192, 296, 375
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	4 cut(s)	156, 190, 294, 373
HinP1I	GCGC	4 cut(s)	156, 190, 294, 373
HinfI	GANTC	2 cut(s)	143, 271
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	37, 279
HpyCH4V	TGCA	2 cut(s)	254, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 314
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	4 cut(s)	156, 190, 294, 373
KasI	GGCGCC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	3 cut(s)	138, 327, 342
Lsp1109I	GCAGC	3 cut(s)	266, 308, 326
MaeI	CTAG	2 cut(s)	137, 231
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	35, 194, 197
MluCI	AATT	2 cut(s)	205, 288
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	90, 224, 319
MseI	TTAA	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	305, 314
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	1 cut(s)	99
NheI	GCTAGC	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	256, 298, 316
PleI	GAGTC	1 cut(s)	151
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	3 cut(s)	255, 297, 315
Sau3AI	GATC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	152
SetI	ASST	3 cut(s)	175, 216, 356
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	157
SgeI	CNNG	9 cut(s)	25, 127, 149, 165, 208, 243, 317, 354, 369
Sse9I	AATT	2 cut(s)	205, 288
SspDI	GGCGCC	1 cut(s)	155
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	137, 231
TaaI	ACNGT	2 cut(s)	37, 279
TasI	AATT	2 cut(s)	205, 288
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TseI	GCWGC	3 cut(s)	254, 296, 314
TspDTI	ATGAA	3 cut(s)	195, 233, 380
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	2 cut(s)	137, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.