Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

50883268 .. 50883734

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG345600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTCTTTCTATGACTCAGCGCCTCTAGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTAGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTAGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCTACTGCAAAGGAGCTGATCAGGATCAATGGAACAACTAAGTCTTTT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

8.93

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 80	2.6e-07	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	141
AluBI	AGCT	4 cut(s)	110, 146, 205, 238
AluI	AGCT	4 cut(s)	110, 146, 205, 238
AlwI	GGATC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	240
BfaI	CTAG	3 cut(s)	26, 92, 143
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	55, 70, 240, 246
BspCNI	CTCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	254
BssMI	GATC	4 cut(s)	55, 70, 240, 246
BstDEI	CTNAG	5 cut(s)	16, 38, 59, 134, 261
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	4 cut(s)	58, 73, 243, 249
BstMBI	GATC	4 cut(s)	55, 70, 240, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	5 cut(s)	90, 110, 146, 205, 238
CviKI_1	RGCY	5 cut(s)	90, 110, 146, 205, 238
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	5 cut(s)	16, 38, 59, 134, 261
DpnI	GATC	4 cut(s)	57, 72, 242, 248
DpnII	GATC	4 cut(s)	55, 70, 240, 246
FaeI	CATG	1 cut(s)	159
FaiI	YATR	4 cut(s)	12, 116, 157, 179
FatI	CATG	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	3 cut(s)	26, 92, 143
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	23
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	74, 244
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	5 cut(s)	16, 38, 59, 134, 261
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	55, 70, 240, 246
LmnI	GCTCC	2 cut(s)	107, 235
LpnPI	CCDG	3 cut(s)	179, 179, 229
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	26, 92, 143
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	57, 72, 242, 248
MboI	GATC	4 cut(s)	55, 70, 240, 246
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	4 cut(s)	55, 70, 240, 246
NlaIII	CATG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	4 cut(s)	55, 70, 240, 246
ScaI	AGTACT	1 cut(s)	141
SchI	GAGTC	1 cut(s)	8
SetI	ASST	4 cut(s)	112, 148, 207, 240
SfcI	CTRYAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	198
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	3 cut(s)	26, 92, 143
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	139
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	39
XspI	CTAG	3 cut(s)	26, 92, 143
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.