RchiOBHm_Chr1g0313941

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001692
Physical Location & Seq
Reverse (-)
1133726 .. 1136032
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54467

Sequence Viewer

Length: 1203 bp
ATGGGTTTTGTGAGAGATTTCGAGAACGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTGGAGTATGGTGAGAATGAGGTTGGATTGAAATGTGGTTTTTTCGAAAGGGGGATTAGCTCCTCTGATTCAATTGAGTCTTGGAATATCAGATGTTATGGGGATGCCTTTGGAGTAGCTGATGATGGCTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCATTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATGTGCAGCCATGCATCTTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAGTGATGACTTCTTACAGAACTCTCGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTAAATTGTTCAAATAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATCACAATTGATCTTGGTCTACCTGTCGATTGGATTTTCTGCAACATTTATTTTACTGATCAGATCTCTGTTAACAGTTGGTTTGGGTCTTGAGGCATCAAGGGCTTTATTTTCTCAGCTACTAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGCTTTCATCTGATCCAAGTATCGTAGATCTTGATATTCCATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAATACTAGCTGCTGTTACATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

400

Amino Acids

45.12

Weight (kDa)

5.63

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 104 - 160 1.3e-17 Protein of unknown function (DUF2838)
ABC_membrane PF00664 288 - 378 4.4e-12 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 1 cut(s) 915
AciI CCGC 1 cut(s) 790
AclI AACGTT 1 cut(s) 687
AclWI GGATC 7 cut(s) 527, 540, 574, 710, 723, 811, 1091
AcuI CTGAAG 1 cut(s) 741
AflII CTTAAG 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 5 cut(s) 59, 118, 159, 563, 834
AjnI CCWGG 2 cut(s) 499, 639
AluBI AGCT 9 cut(s) 147, 206, 447, 581, 664, 894, 1015, 1151, 1187
AluI AGCT 9 cut(s) 147, 206, 447, 581, 664, 894, 1015, 1151, 1187
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 7 cut(s) 527, 540, 574, 710, 723, 811, 1091
AoxI GGCC 2 cut(s) 410, 587
ApeKI GCWGC 4 cut(s) 548, 661, 866, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspLEI GCGC 2 cut(s) 758, 784
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 110, 274
AsuII TTCGAA 1 cut(s) 132
BaeGI GKGCMC 2 cut(s) 427, 639
BamHI GGATCC 2 cut(s) 532, 715
BanI GGYRCC 1 cut(s) 634
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 4 cut(s) 560, 673, 853, 1174
BccI CCATC 3 cut(s) 206, 519, 856
BciT130I CCWGG 2 cut(s) 501, 641
BciVI GTATCC 1 cut(s) 1068
BclI TGATCA 1 cut(s) 954
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 1184
BfoI RGCGCY 1 cut(s) 785
BfrI CTTAAG 1 cut(s) 785
BfuI GTATCC 1 cut(s) 1068
BglII AGATCT 2 cut(s) 959, 1111
BisI GCNGC 4 cut(s) 549, 662, 867, 1188
BlsI GCNGC 4 cut(s) 550, 663, 868, 1189
Bme1390I CCNGG 2 cut(s) 501, 641
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 4 cut(s) 411, 534, 636, 717
BmrFI CCNGG 2 cut(s) 501, 641
BmsI GCATC 3 cut(s) 181, 565, 1001
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 1007
Bsa29I ATCGAT 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 808
BsaJI CCNNGG 4 cut(s) 225, 365, 500, 639
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 808
BseBI CCWGG 2 cut(s) 501, 641
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 4 cut(s) 225, 365, 500, 639
BseGI GGATG 3 cut(s) 37, 196, 867
BseJI GATNNNNATC 1 cut(s) 808
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 396, 1025
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 2 cut(s) 427, 639
BseXI GCAGC 4 cut(s) 560, 673, 853, 1174
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 2 cut(s) 412, 589
BshNI GGYRCC 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 812
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 412, 589
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 427, 639
BspACI CCGC 1 cut(s) 790
BspANI GGCC 2 cut(s) 412, 589
BspCNI CTCAG 2 cut(s) 397, 1024
BspDI ATCGAT 1 cut(s) 812
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 4 cut(s) 411, 534, 636, 717
BspPI GGATC 7 cut(s) 527, 540, 574, 710, 723, 811, 1091
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 4 cut(s) 225, 365, 500, 639
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 501, 641
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 785
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 405, 1011, 1079
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 37, 196, 867
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 2 cut(s) 758, 784
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 4 cut(s) 545, 762, 998, 1148
BstNI CCWGG 2 cut(s) 501, 641
BstNSI RCATGY 1 cut(s) 546
BstSCI CCNGG 2 cut(s) 499, 639
BstSLI GKGCMC 2 cut(s) 427, 639
BstV1I GCAGC 4 cut(s) 560, 673, 853, 1174
BstX2I RGATCY 5 cut(s) 532, 566, 715, 959, 1111
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 5 cut(s) 532, 566, 715, 959, 1111
Bsu15I ATCGAT 1 cut(s) 812
BsuI GTATCC 1 cut(s) 1068
BsuRI GGCC 2 cut(s) 412, 589
BsuTUI ATCGAT 1 cut(s) 812
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 37, 196, 867
BtsIMutI CAGTG 2 cut(s) 425, 484
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 758, 784
Cfr13I GGNCC 1 cut(s) 410
ClaI ATCGAT 1 cut(s) 812
DdeI CTNAG 3 cut(s) 405, 1011, 1079
DrdI GACNNNNNNGTC 1 cut(s) 473
DseDI GACNNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 499, 639
EcoT14I CCWWGG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 365
FalI AAGNNNNNCTT 2 cut(s) 592, 624
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 549, 662, 867, 1188
FokI GGATG 3 cut(s) 44, 203, 874
Fsp4HI GCNGC 4 cut(s) 549, 662, 867, 1188
FspBI CTAG 1 cut(s) 1184
GlaI GCGC 2 cut(s) 757, 783
GluI GCNGC 4 cut(s) 549, 662, 867, 1188
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 2 cut(s) 412, 589
HhaI GCGC 2 cut(s) 758, 784
Hin6I GCGC 2 cut(s) 756, 782
HinP1I GCGC 2 cut(s) 756, 782
HincII GTYRAC 3 cut(s) 349, 685, 969
HindII GTYRAC 3 cut(s) 349, 685, 969
HinfI GANTC 4 cut(s) 155, 164, 307, 1055
HpaI GTTAAC 1 cut(s) 969
HphI GGTGA 2 cut(s) 110, 274
Hpy166II GTNNAC 6 cut(s) 349, 461, 618, 685, 916, 969
Hpy188I TCNGA 5 cut(s) 154, 179, 843, 959, 1096
Hpy188III TCNNGA 9 cut(s) 22, 257, 311, 484, 560, 719, 746, 986, 1115
Hpy8I GTNNAC 6 cut(s) 349, 461, 618, 685, 916, 969
HpyAV CCTTC 4 cut(s) 362, 557, 746, 1065
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4IV ACGT 2 cut(s) 27, 687
HpyCH4V TGCA 4 cut(s) 548, 556, 938, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 545, 762, 998, 1148
HpyF3I CTNAG 3 cut(s) 405, 1011, 1079
HpySE526I ACGT 2 cut(s) 27, 687
HspAI GCGC 2 cut(s) 756, 782
Ksp22I TGATCA 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 969
LmnI GCTCC 2 cut(s) 152, 1148
Lsp1109I GCAGC 4 cut(s) 560, 673, 853, 1174
LweI GCATC 3 cut(s) 181, 565, 1001
MaeI CTAG 1 cut(s) 1184
MaeII ACGT 2 cut(s) 27, 687
MaeIII GTNAC 1 cut(s) 1192
MboII GAAGA 6 cut(s) 277, 316, 347, 505, 561, 761
MfeI CAATTG 3 cut(s) 59, 159, 902
MflI RGATCY 5 cut(s) 532, 566, 715, 959, 1111
MhlI GDGCHC 2 cut(s) 427, 639
MluCI AATT 7 cut(s) 59, 86, 159, 470, 770, 826, 902
MlyI GAGTC 2 cut(s) 173, 1049
MmeI TCCRAC 1 cut(s) 91
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 3 cut(s) 710, 786, 968
MslI CAYNNNNRTG 1 cut(s) 418
MspCI CTTAAG 1 cut(s) 785
MspR9I CCNGG 2 cut(s) 501, 641
MunI CAATTG 3 cut(s) 59, 159, 902
MvaI CCWGG 2 cut(s) 501, 641
MwoI GCNNNNNNNGC 4 cut(s) 545, 762, 998, 1148
NlaIV GGNNCC 4 cut(s) 411, 534, 636, 717
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 546
NspV TTCGAA 1 cut(s) 132
PagI TCATGA 1 cut(s) 256
PciI ACATGT 1 cut(s) 542
PfeI GAWTC 2 cut(s) 155, 307
PkrI GCNGC 4 cut(s) 550, 663, 868, 1189
PleI GAGTC 2 cut(s) 172, 1049
PpsI GAGTC 2 cut(s) 172, 1049
PscI ACATGT 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 499, 639
PspGI CCWGG 2 cut(s) 499, 639
PspN4I GGNNCC 4 cut(s) 411, 534, 636, 717
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 5 cut(s) 532, 566, 715, 959, 1111
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 3 cut(s) 710, 786, 968
SatI GCNGC 4 cut(s) 549, 662, 867, 1188
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 2 cut(s) 173, 1049
ScrFI CCNGG 2 cut(s) 501, 641
SduI GDGCHC 2 cut(s) 427, 639
SfaNI GCATC 3 cut(s) 181, 565, 1001
SfuI TTCGAA 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 785, 986
SmoI CTYRAG 2 cut(s) 785, 986
Sse9I AATT 7 cut(s) 59, 86, 159, 470, 770, 826, 902
SsiI CCGC 1 cut(s) 790
SspMI CTAG 1 cut(s) 1184
StyD4I CCNGG 2 cut(s) 499, 639
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 973
TaiI ACGT 2 cut(s) 30, 690
TaqI TCGA 7 cut(s) 21, 132, 302, 523, 747, 812, 923
TasI AATT 7 cut(s) 59, 86, 159, 470, 770, 826, 902
TfiI GAWTC 2 cut(s) 155, 307
Tru1I TTAA 3 cut(s) 710, 786, 968
Tru9I TTAA 3 cut(s) 710, 786, 968
TscAI CASTG 2 cut(s) 432, 484
TseI GCWGC 4 cut(s) 548, 661, 866, 1187
TspDTI ATGAA 6 cut(s) 99, 251, 373, 387, 1022, 1080
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 432, 484
Vha464I CTTAAG 1 cut(s) 785
XceI RCATGY 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 915
XspI CTAG 1 cut(s) 1184
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.