RLG00000034664

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
47488658 .. 47491163
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034664

Sequence Viewer

Length: 1533 bp
ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCCGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCCCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAAACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTAGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCTACTGCAAAGGAGCTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAAAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACATAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTAGCGCGGCAGTTCTCGCCTCTGTAGCACTCTGGTTTATTGGAATGACGCTTTCTTATGGTCTTTCATTAAACATGTCATTGAGCTATTCAATTCAAAACCAGTGCACTATAGCAAATTACATCATTTCTGTTGAAAGACTAAATCAATACACACATGTACCAAGTGAAGCCCCTGAAGTTATAGAGGGAAACCGTCCACCTCCCAACTGGCCTATTGTAGGAAAAGTGGAAATACAAAATTTGCAGTGTTTTCGTATTTCAAAACAACCACCACTTGTTCCCCACCAACTCATCCAGAATTCATATTTCTGCAAGAACCAGAATAACAGCATTATGTTGGAGAAGAAGGCAGGTGAAAAGGTGATACTGCTTTCAGAAGAACATAAGAGAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAACTTGACGTCAAAACTGCATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCGGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAAGGACGAAAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGGTACACATTCAACTATTCAAGTGA

Protein Analysis

511

Amino Acids

57.94

Weight (kDa)

6.25

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 11 - 201 2.5e-21 ABC transporter transmembrane region
XH PF03469 452 - 501 7.7e-07 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 983
AatII GACGTC 1 cut(s) 1086
Acc36I ACCTGC 1 cut(s) 983
AccB1I GGYRCC 2 cut(s) 482, 1467
AccII CGCG 1 cut(s) 647
AciI CCGC 2 cut(s) 517, 647
AclWI GGATC 2 cut(s) 93, 434
AcsI RAATTY 5 cut(s) 532, 880, 940, 1272, 1390
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 2 cut(s) 483, 1083
AfaI GTAC 3 cut(s) 321, 801, 1512
AfiI CCNNNNNNNGG 3 cut(s) 65, 523, 860
AflIII ACRYGT 2 cut(s) 714, 796
AjnI CCWGG 2 cut(s) 270, 1323
Alw21I GWGCWC 2 cut(s) 178, 749
Alw44I GTGCAC 2 cut(s) 174, 745
AlwI GGATC 2 cut(s) 93, 434
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 2 cut(s) 851, 1440
ApaLI GTGCAC 2 cut(s) 174, 745
ApeKI GCWGC 4 cut(s) 5, 326, 581, 605
ApoI RAATTY 5 cut(s) 532, 880, 940, 1272, 1390
AspLEI GCGC 3 cut(s) 485, 647, 1102
AspS9I GGNCC 1 cut(s) 1440
AsuHPI GGTGA 3 cut(s) 530, 1007, 1015
AsuNHI GCTAGC 1 cut(s) 557
BaeGI GKGCMC 2 cut(s) 178, 749
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BanI GGYRCC 2 cut(s) 482, 1467
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 2 cut(s) 178, 749
BbvI GCAGC 3 cut(s) 313, 593, 617
BccI CCATC 1 cut(s) 1151
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 2 cut(s) 272, 1325
BciVI GTATCC 1 cut(s) 207
BclI TGATCA 1 cut(s) 1296
BfaI CTAG 4 cut(s) 323, 464, 558, 1103
BfmI CTRYAG 3 cut(s) 386, 663, 750
BfoI RGCGCY 2 cut(s) 486, 1103
BfuAI ACCTGC 1 cut(s) 983
BfuI GTATCC 1 cut(s) 207
BglII AGATCT 1 cut(s) 250
BisI GCNGC 5 cut(s) 6, 327, 582, 606, 648
BlsI GCNGC 5 cut(s) 7, 328, 583, 607, 649
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 272, 1325
BmgT120I GGNCC 1 cut(s) 1440
BmiI GGNNCC 2 cut(s) 484, 1469
BmrFI CCNGG 2 cut(s) 272, 1325
BmsI GCATC 1 cut(s) 140
BmtI GCTAGC 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 425
BsaHI GRCGYC 2 cut(s) 483, 1083
BsaJI CCNNGG 1 cut(s) 1230
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 523, 860
Bse1I ACTGG 2 cut(s) 742, 854
Bse3DI GCAATG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 2 cut(s) 272, 1325
BseDI CCNNGG 1 cut(s) 1230
BseGI GGATG 1 cut(s) 933
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 3 cut(s) 65, 523, 860
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 164, 1298
BseNI ACTGG 2 cut(s) 742, 854
BseSI GKGCMC 2 cut(s) 178, 749
BseXI GCAGC 3 cut(s) 313, 593, 617
Bsh1236I CGCG 1 cut(s) 647
BshFI GGCC 2 cut(s) 853, 1442
BshNI GGYRCC 2 cut(s) 482, 1467
BsiHKAI GWGCWC 2 cut(s) 178, 749
BslI CCNNNNNNNGG 3 cut(s) 65, 523, 860
BsnI GGCC 2 cut(s) 853, 1442
Bsp1286I GDGCHC 2 cut(s) 178, 749
Bsp143I GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
Bsp19I CCATGG 1 cut(s) 1230
BspACI CCGC 2 cut(s) 517, 647
BspANI GGCC 2 cut(s) 853, 1442
BspCNI CTCAG 2 cut(s) 163, 1297
BspFNI CGCG 1 cut(s) 647
BspLI GGNNCC 2 cut(s) 484, 1469
BspMI ACCTGC 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 2 cut(s) 93, 434
BspT107I GGYRCC 2 cut(s) 482, 1467
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 2 cut(s) 742, 854
BssECI CCNNGG 1 cut(s) 1230
BssMI GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
BssNI GRCGYC 2 cut(s) 483, 1083
BssT1I CCWWGG 1 cut(s) 1230
Bst2UI CCWGG 2 cut(s) 272, 1325
Bst4CI ACNGT 5 cut(s) 112, 630, 836, 1203, 1308
Bst6I CTCTTC 2 cut(s) 1212, 1337
BstACI GRCGYC 2 cut(s) 483, 1083
BstC8I GCNNGC 2 cut(s) 559, 1466
BstDEI CTNAG 7 cut(s) 150, 218, 239, 314, 441, 1284, 1452
BstDSI CCRYGG 1 cut(s) 1230
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 1 cut(s) 933
BstFNI CGCG 1 cut(s) 647
BstH2I RGCGCY 2 cut(s) 486, 1103
BstHHI GCGC 3 cut(s) 485, 647, 1102
BstKTI GATC 6 cut(s) 48, 101, 238, 253, 429, 1299
BstMBI GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 287, 656, 665
BstNI CCWGG 2 cut(s) 272, 1325
BstNSI RCATGY 2 cut(s) 718, 800
BstSCI CCNGG 2 cut(s) 270, 1323
BstSFI CTRYAG 3 cut(s) 386, 663, 750
BstSLI GKGCMC 2 cut(s) 178, 749
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 3 cut(s) 313, 593, 617
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 98, 250
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 2 cut(s) 98, 250
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 853, 1442
BtgI CCRYGG 1 cut(s) 1230
BtsCI GGATG 1 cut(s) 933
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 749, 893
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 2 cut(s) 559, 1466
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 3 cut(s) 485, 647, 1102
Cfr13I GGNCC 1 cut(s) 1440
CseI GACGC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 320, 800, 1511
CviAII CATG 7 cut(s) 181, 336, 715, 797, 1151, 1231, 1337
CviQI GTAC 3 cut(s) 320, 800, 1511
DdeI CTNAG 7 cut(s) 150, 218, 239, 314, 441, 1284, 1452
DinI GGCGCC 1 cut(s) 484
DpnI GATC 6 cut(s) 47, 100, 237, 252, 428, 1298
DpnII GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
Eam1104I CTCTTC 2 cut(s) 1212, 1337
EarI CTCTTC 2 cut(s) 1212, 1337
Eco130I CCWWGG 1 cut(s) 1230
Eco57I CTGAAG 1 cut(s) 837
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 2 cut(s) 270, 1323
EcoT14I CCWWGG 1 cut(s) 1230
EcoT22I ATGCAT 1 cut(s) 1152
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 7 cut(s) 184, 339, 718, 800, 1154, 1234, 1340
FalI AAGNNNNNCTT 2 cut(s) 1111, 1143
FatI CATG 7 cut(s) 180, 335, 714, 796, 1150, 1230, 1336
FbaI TGATCA 1 cut(s) 1296
Fnu4HI GCNGC 5 cut(s) 6, 327, 582, 606, 648
FokI GGATG 1 cut(s) 920
Fsp4HI GCNGC 5 cut(s) 6, 327, 582, 606, 648
FspBI CTAG 4 cut(s) 323, 464, 558, 1103
GlaI GCGC 3 cut(s) 484, 646, 1101
GluI GCNGC 5 cut(s) 6, 327, 582, 606, 648
HaeII RGCGCY 2 cut(s) 486, 1103
HaeIII GGCC 2 cut(s) 853, 1442
HgaI GACGC 1 cut(s) 697
HhaI GCGC 3 cut(s) 485, 647, 1102
Hin1I GRCGYC 2 cut(s) 483, 1083
Hin1II CATG 7 cut(s) 184, 339, 718, 800, 1154, 1234, 1340
Hin6I GCGC 3 cut(s) 483, 645, 1100
HinP1I GCGC 3 cut(s) 483, 645, 1100
HincII GTYRAC 2 cut(s) 108, 1357
HindII GTYRAC 2 cut(s) 108, 1357
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 5 cut(s) 194, 470, 598, 622, 1313
HpaI GTTAAC 1 cut(s) 108
HphI GGTGA 3 cut(s) 530, 1007, 1015
Hpy166II GTNNAC 7 cut(s) 55, 108, 176, 747, 839, 1357, 1513
Hpy188I TCNGA 5 cut(s) 98, 235, 1018, 1287, 1374
Hpy188III TCNNGA 4 cut(s) 125, 254, 937, 1277
Hpy8I GTNNAC 7 cut(s) 55, 108, 176, 747, 839, 1357, 1513
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 204, 982, 1207, 1282
HpyCH4III ACNGT 5 cut(s) 112, 630, 836, 1203, 1308
HpyCH4IV ACGT 1 cut(s) 1083
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 656, 665
HpyF3I CTNAG 7 cut(s) 150, 218, 239, 314, 441, 1284, 1452
HpySE526I ACGT 1 cut(s) 1083
Hsp92I GRCGYC 2 cut(s) 483, 1083
Hsp92II CATG 7 cut(s) 184, 339, 718, 800, 1154, 1234, 1340
HspAI GCGC 3 cut(s) 483, 645, 1100
KasI GGCGCC 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 1296
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
LmnI GCTCC 2 cut(s) 287, 415
Lsp1109I GCAGC 3 cut(s) 313, 593, 617
LweI GCATC 1 cut(s) 140
MaeI CTAG 4 cut(s) 323, 464, 558, 1103
MaeII ACGT 1 cut(s) 1083
MaeIII GTNAC 1 cut(s) 331
MalI GATC 6 cut(s) 47, 100, 237, 252, 428, 1298
MboI GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
MboII GAAGA 8 cut(s) 521, 524, 997, 1031, 1166, 1222, 1229, 1354
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 98, 250
MhlI GDGCHC 2 cut(s) 178, 749
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 2 cut(s) 188, 479
MmeI TCCRAC 2 cut(s) 960, 1401
Mph1103I ATGCAT 1 cut(s) 1152
MseI TTAA 4 cut(s) 107, 710, 1136, 1205
MslI CAYNNNNRTG 2 cut(s) 362, 1155
MspR9I CCNGG 2 cut(s) 272, 1325
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 2 cut(s) 272, 1325
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 3 cut(s) 287, 656, 665
NarI GGCGCC 1 cut(s) 483
NcoI CCATGG 1 cut(s) 1230
NdeII GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 7 cut(s) 184, 339, 718, 800, 1154, 1234, 1340
NlaIV GGNNCC 2 cut(s) 484, 1469
NsiI ATGCAT 1 cut(s) 1152
NspI RCATGY 2 cut(s) 718, 800
PaqCI CACCTGC 1 cut(s) 983
PciI ACATGT 2 cut(s) 714, 796
PfeI GAWTC 3 cut(s) 598, 622, 1313
PkrI GCNGC 5 cut(s) 7, 328, 583, 607, 649
PleI GAGTC 2 cut(s) 188, 478
PluTI GGCGCC 1 cut(s) 486
PpsI GAGTC 2 cut(s) 188, 478
PscI ACATGT 2 cut(s) 714, 796
Psp6I CCWGG 2 cut(s) 270, 1323
PspGI CCWGG 2 cut(s) 270, 1323
PspN4I GGNNCC 2 cut(s) 484, 1469
PspPI GGNCC 1 cut(s) 1440
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 2 cut(s) 98, 250
RsaI GTAC 3 cut(s) 321, 801, 1512
RsaNI GTAC 3 cut(s) 320, 800, 1511
RseI CAYNNNNRTG 2 cut(s) 362, 1155
SaqAI TTAA 4 cut(s) 107, 710, 1136, 1205
SatI GCNGC 5 cut(s) 6, 327, 582, 606, 648
Sau3AI GATC 6 cut(s) 45, 98, 235, 250, 426, 1296
Sau96I GGNCC 1 cut(s) 1440
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 2 cut(s) 188, 479
ScrFI CCNGG 2 cut(s) 272, 1325
SduI GDGCHC 2 cut(s) 178, 749
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 3 cut(s) 386, 663, 750
SfoI GGCGCC 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 362, 1155
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 2 cut(s) 517, 647
SspDI GGCGCC 1 cut(s) 482
SspI AATATT 2 cut(s) 395, 1411
SspMI CTAG 4 cut(s) 323, 464, 558, 1103
StyD4I CCNGG 2 cut(s) 270, 1323
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 5 cut(s) 112, 630, 836, 1203, 1308
TaiI ACGT 1 cut(s) 1086
TaqI TCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 3 cut(s) 598, 622, 1313
Tru1I TTAA 4 cut(s) 107, 710, 1136, 1205
Tru9I TTAA 4 cut(s) 107, 710, 1136, 1205
TscAI CASTG 2 cut(s) 749, 893
TseI GCWGC 4 cut(s) 5, 326, 581, 605
TspRI CASTG 2 cut(s) 749, 893
VneI GTGCAC 2 cut(s) 174, 745
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 5 cut(s) 532, 880, 940, 1272, 1390
XceI RCATGY 2 cut(s) 718, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 846
XspI CTAG 4 cut(s) 323, 464, 558, 1103
ZraI GACGTC 1 cut(s) 1084
ZrmI AGTACT 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.